Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2198 and DvMF_2199 are separated by 283 nucleotides DvMF_2199 and DvMF_2200 are separated by 288 nucleotides
DvMF_2198: DvMF_2198 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,747,636 to 2,751,232
_2198
DvMF_2199: DvMF_2199 - hypothetical protein (RefSeq), at 2,751,516 to 2,752,109
_2199
DvMF_2200: DvMF_2200 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,752,398 to 2,753,777
_2200
Position (kb)
2751
2752
2753 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2750.524 kb on - strand, within DvMF_2198 at 2750.628 kb on + strand, within DvMF_2198 at 2750.740 kb on + strand, within DvMF_2198 at 2750.792 kb on + strand, within DvMF_2198 at 2750.808 kb on - strand, within DvMF_2198 at 2750.816 kb on + strand, within DvMF_2198 at 2750.860 kb on + strand, within DvMF_2198 at 2750.873 kb on + strand at 2750.881 kb on - strand at 2750.991 kb on + strand at 2751.048 kb on + strand at 2751.065 kb on + strand at 2751.185 kb on - strand at 2751.242 kb on - strand at 2751.322 kb on - strand at 2751.327 kb on - strand at 2751.573 kb on - strand at 2751.573 kb on - strand at 2751.739 kb on - strand, within DvMF_2199 at 2751.784 kb on - strand, within DvMF_2199 at 2751.971 kb on - strand, within DvMF_2199 at 2752.022 kb on + strand, within DvMF_2199 at 2752.066 kb on + strand at 2752.184 kb on + strand at 2752.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 2,750,524 - DvMF_2198 0.80 -1.3 2,750,628 + DvMF_2198 0.83 +0.3 2,750,740 + DvMF_2198 0.86 -1.5 2,750,792 + DvMF_2198 0.88 -1.3 2,750,808 - DvMF_2198 0.88 -0.2 2,750,816 + DvMF_2198 0.88 -0.7 2,750,860 + DvMF_2198 0.90 -0.7 2,750,873 + -1.6 2,750,881 - -0.7 2,750,991 + -1.3 2,751,048 + -0.8 2,751,065 + -0.4 2,751,185 - -0.4 2,751,242 - -1.1 2,751,322 - -0.2 2,751,327 - +0.2 2,751,573 - -0.0 2,751,573 - -0.4 2,751,739 - DvMF_2199 0.38 -4.2 2,751,784 - DvMF_2199 0.45 +0.4 2,751,971 - DvMF_2199 0.77 -0.4 2,752,022 + DvMF_2199 0.85 +0.6 2,752,066 + -1.1 2,752,184 + -0.4 2,752,221 - -0.0
Or see this region's nucleotide sequence