Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2165 and DvMF_2166 are separated by 309 nucleotides DvMF_2166 and DvMF_2167 are separated by 121 nucleotides DvMF_2167 and DvMF_2168 are separated by 204 nucleotides
DvMF_2165: DvMF_2165 - transcriptional regulator, TetR family (RefSeq), at 2,701,562 to 2,702,353
_2165
DvMF_2166: DvMF_2166 - protein of unknown function DUF169 (RefSeq), at 2,702,663 to 2,703,508
_2166
DvMF_2167: DvMF_2167 - transcriptional regulator, MarR family (RefSeq), at 2,703,630 to 2,704,115
_2167
DvMF_2168: DvMF_2168 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,704,320 to 2,704,748
_2168
Position (kb)
2702
2703
2704 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2701.954 kb on + strand, within DvMF_2165 at 2701.981 kb on + strand, within DvMF_2165 at 2702.257 kb on - strand, within DvMF_2165 at 2702.259 kb on + strand, within DvMF_2165 at 2702.277 kb on + strand at 2702.577 kb on - strand at 2702.752 kb on + strand, within DvMF_2166 at 2702.880 kb on + strand, within DvMF_2166 at 2702.897 kb on + strand, within DvMF_2166 at 2703.207 kb on + strand, within DvMF_2166 at 2703.429 kb on + strand at 2703.431 kb on + strand at 2703.746 kb on + strand, within DvMF_2167 at 2703.870 kb on - strand, within DvMF_2167 at 2703.917 kb on + strand, within DvMF_2167 at 2704.013 kb on - strand, within DvMF_2167 at 2704.177 kb on - strand at 2704.191 kb on + strand at 2704.356 kb on - strand at 2704.400 kb on + strand, within DvMF_2168 at 2704.428 kb on + strand, within DvMF_2168 at 2704.433 kb on + strand, within DvMF_2168 at 2704.433 kb on + strand, within DvMF_2168
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 2,701,954 + DvMF_2165 0.49 -1.7 2,701,981 + DvMF_2165 0.53 -0.2 2,702,257 - DvMF_2165 0.88 +1.3 2,702,259 + DvMF_2165 0.88 -0.2 2,702,277 + +0.2 2,702,577 - +0.1 2,702,752 + DvMF_2166 0.11 -1.8 2,702,880 + DvMF_2166 0.26 -1.3 2,702,897 + DvMF_2166 0.28 -0.1 2,703,207 + DvMF_2166 0.64 -0.6 2,703,429 + -0.4 2,703,431 + -0.8 2,703,746 + DvMF_2167 0.24 +1.0 2,703,870 - DvMF_2167 0.49 +3.0 2,703,917 + DvMF_2167 0.59 -0.7 2,704,013 - DvMF_2167 0.79 +2.8 2,704,177 - -0.8 2,704,191 + -0.5 2,704,356 - -0.7 2,704,400 + DvMF_2168 0.19 -1.5 2,704,428 + DvMF_2168 0.25 -0.9 2,704,433 + DvMF_2168 0.26 -0.6 2,704,433 + DvMF_2168 0.26 -1.6
Or see this region's nucleotide sequence