Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2152

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2151 and DvMF_2152 are separated by 548 nucleotidesDvMF_2152 and DvMF_2153 are separated by 57 nucleotides DvMF_2151: DvMF_2151 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,680,580 to 2,681,272 _2151 DvMF_2152: DvMF_2152 - thioesterase superfamily protein (RefSeq), at 2,681,821 to 2,682,255 _2152 DvMF_2153: DvMF_2153 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,682,313 to 2,684,127 _2153 Position (kb) 2681 2682 2683Strain fitness (log2 ratio) -2 -1 0 1at 2680.844 kb on - strand, within DvMF_2151at 2681.008 kb on - strand, within DvMF_2151at 2681.258 kb on + strandat 2681.288 kb on + strandat 2681.326 kb on + strandat 2681.334 kb on - strandat 2681.349 kb on - strandat 2681.484 kb on + strandat 2681.492 kb on - strandat 2681.525 kb on - strandat 2681.654 kb on - strandat 2681.656 kb on + strandat 2682.029 kb on - strand, within DvMF_2152at 2682.265 kb on + strandat 2682.394 kb on - strandat 2682.892 kb on - strand, within DvMF_2153at 2682.942 kb on - strand, within DvMF_2153at 2683.085 kb on + strand, within DvMF_2153at 2683.129 kb on - strand, within DvMF_2153

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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2,680,844 - DvMF_2151 0.38 -1.9
2,681,008 - DvMF_2151 0.62 -0.2
2,681,258 + -1.1
2,681,288 + -0.9
2,681,326 + -1.1
2,681,334 - -0.1
2,681,349 - -1.4
2,681,484 + -0.9
2,681,492 - -1.2
2,681,525 - -0.8
2,681,654 - -0.9
2,681,656 + -0.6
2,682,029 - DvMF_2152 0.48 -1.4
2,682,265 + -0.3
2,682,394 - -0.2
2,682,892 - DvMF_2153 0.32 -0.1
2,682,942 - DvMF_2153 0.35 -0.6
2,683,085 + DvMF_2153 0.43 -1.0
2,683,129 - DvMF_2153 0.45 -1.1

Or see this region's nucleotide sequence