Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2132

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2131 and infA are separated by 414 nucleotidesinfA and DvMF_2133 are separated by 514 nucleotides DvMF_2131: DvMF_2131 - prolipoprotein diacylglyceryl transferase (RefSeq), at 2,653,517 to 2,654,314 _2131 DvMF_2132: infA - translation initiation factor IF-1 (RefSeq), at 2,654,729 to 2,654,947 infA DvMF_2133: DvMF_2133 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,655,462 to 2,657,498 _2133 Position (kb) 2654 2655Strain fitness (log2 ratio) -2 -1 0 1at 2654.711 kb on - strandat 2654.774 kb on + strand, within infAat 2654.779 kb on + strand, within infAat 2654.884 kb on + strand, within infAat 2655.311 kb on + strandat 2655.420 kb on + strandat 2655.428 kb on - strandat 2655.521 kb on + strandat 2655.652 kb on - strandat 2655.674 kb on + strand, within DvMF_2133at 2655.687 kb on - strand, within DvMF_2133at 2655.773 kb on + strand, within DvMF_2133

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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2,654,711 - -2.7
2,654,774 + infA DvMF_2132 0.21 +1.1
2,654,779 + infA DvMF_2132 0.23 +0.0
2,654,884 + infA DvMF_2132 0.71 +0.6
2,655,311 + -0.8
2,655,420 + -2.0
2,655,428 - -1.1
2,655,521 + -0.8
2,655,652 - +0.0
2,655,674 + DvMF_2133 0.10 -0.8
2,655,687 - DvMF_2133 0.11 +0.4
2,655,773 + DvMF_2133 0.15 -1.0

Or see this region's nucleotide sequence