Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2070

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2069 and DvMF_2070 are separated by 619 nucleotidesDvMF_2070 and DvMF_2071 overlap by 4 nucleotidesDvMF_2071 and DvMF_2072 are separated by 74 nucleotides DvMF_2069: DvMF_2069 - DNA topoisomerase I (RefSeq), at 2,567,011 to 2,569,287 _2069 DvMF_2070: DvMF_2070 - hypothetical protein (RefSeq), at 2,569,907 to 2,571,382 _2070 DvMF_2071: DvMF_2071 - hypothetical protein (RefSeq), at 2,571,379 to 2,572,233 _2071 DvMF_2072: DvMF_2072 - hypothetical protein (RefSeq), at 2,572,308 to 2,573,084 _2072 Position (kb) 2569 2570 2571 2572Strain fitness (log2 ratio) -2 -1 0 1at 2569.370 kb on + strandat 2569.488 kb on - strandat 2569.506 kb on - strandat 2569.597 kb on - strandat 2569.659 kb on + strandat 2569.677 kb on - strandat 2569.677 kb on - strandat 2569.677 kb on - strandat 2569.692 kb on + strandat 2569.721 kb on - strandat 2569.847 kb on - strandat 2570.345 kb on - strand, within DvMF_2070at 2570.886 kb on + strand, within DvMF_2070at 2571.036 kb on + strand, within DvMF_2070at 2571.192 kb on + strand, within DvMF_2070at 2571.193 kb on - strand, within DvMF_2070at 2571.292 kb on + strandat 2571.473 kb on + strand, within DvMF_2071at 2571.488 kb on + strand, within DvMF_2071at 2571.488 kb on + strand, within DvMF_2071at 2571.488 kb on + strand, within DvMF_2071at 2571.687 kb on - strand, within DvMF_2071at 2571.861 kb on - strand, within DvMF_2071at 2572.197 kb on + strandat 2572.339 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
remove
2,569,370 + +0.0
2,569,488 - -0.1
2,569,506 - -0.4
2,569,597 - -0.5
2,569,659 + -0.4
2,569,677 - -0.2
2,569,677 - -0.5
2,569,677 - -1.6
2,569,692 + -1.2
2,569,721 - +0.1
2,569,847 - -1.3
2,570,345 - DvMF_2070 0.30 -1.4
2,570,886 + DvMF_2070 0.66 -2.7
2,571,036 + DvMF_2070 0.76 -1.9
2,571,192 + DvMF_2070 0.87 -0.5
2,571,193 - DvMF_2070 0.87 -0.7
2,571,292 + -0.6
2,571,473 + DvMF_2071 0.11 -0.6
2,571,488 + DvMF_2071 0.13 -2.0
2,571,488 + DvMF_2071 0.13 -1.1
2,571,488 + DvMF_2071 0.13 -0.4
2,571,687 - DvMF_2071 0.36 -0.5
2,571,861 - DvMF_2071 0.56 +0.7
2,572,197 + -0.6
2,572,339 + -0.5

Or see this region's nucleotide sequence