Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2036

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2035 and DvMF_2036 are separated by 362 nucleotidesDvMF_2036 and hisS are separated by 309 nucleotides DvMF_2035: DvMF_2035 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase (RefSeq), at 2,522,834 to 2,525,176 _2035 DvMF_2036: DvMF_2036 - Methyltransferase type 11 (RefSeq), at 2,525,539 to 2,526,345 _2036 DvMF_2037: hisS - histidyl-tRNA synthetase (RefSeq), at 2,526,655 to 2,527,935 hisS Position (kb) 2525 2526 2527Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2524.567 kb on - strand, within DvMF_2035at 2524.618 kb on - strand, within DvMF_2035at 2524.710 kb on + strand, within DvMF_2035at 2524.728 kb on - strand, within DvMF_2035at 2524.735 kb on - strand, within DvMF_2035at 2524.884 kb on + strand, within DvMF_2035at 2524.907 kb on - strand, within DvMF_2035at 2525.008 kb on - strandat 2525.117 kb on + strandat 2525.296 kb on + strandat 2525.306 kb on - strandat 2525.463 kb on + strandat 2525.463 kb on + strandat 2525.502 kb on - strandat 2525.573 kb on + strandat 2525.647 kb on + strand, within DvMF_2036at 2525.664 kb on + strand, within DvMF_2036at 2525.751 kb on + strand, within DvMF_2036at 2525.754 kb on - strand, within DvMF_2036at 2525.869 kb on + strand, within DvMF_2036at 2525.874 kb on - strand, within DvMF_2036at 2526.077 kb on + strand, within DvMF_2036at 2526.087 kb on + strand, within DvMF_2036at 2526.112 kb on + strand, within DvMF_2036at 2526.187 kb on - strand, within DvMF_2036at 2526.322 kb on - strandat 2526.511 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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2,524,567 - DvMF_2035 0.74 -0.4
2,524,618 - DvMF_2035 0.76 -0.3
2,524,710 + DvMF_2035 0.80 +0.0
2,524,728 - DvMF_2035 0.81 +0.8
2,524,735 - DvMF_2035 0.81 -0.3
2,524,884 + DvMF_2035 0.87 -0.9
2,524,907 - DvMF_2035 0.88 -0.9
2,525,008 - -0.9
2,525,117 + -0.7
2,525,296 + +0.3
2,525,306 - -0.6
2,525,463 + -0.9
2,525,463 + -0.3
2,525,502 - -1.1
2,525,573 + -2.3
2,525,647 + DvMF_2036 0.13 -2.3
2,525,664 + DvMF_2036 0.15 -1.7
2,525,751 + DvMF_2036 0.26 -2.7
2,525,754 - DvMF_2036 0.27 -2.3
2,525,869 + DvMF_2036 0.41 -2.7
2,525,874 - DvMF_2036 0.42 -2.4
2,526,077 + DvMF_2036 0.67 -5.8
2,526,087 + DvMF_2036 0.68 -1.3
2,526,112 + DvMF_2036 0.71 -3.0
2,526,187 - DvMF_2036 0.80 -2.9
2,526,322 - -0.3
2,526,511 + -0.3

Or see this region's nucleotide sequence