Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1952 and DvMF_1953 are separated by 78 nucleotides DvMF_1953 and DvMF_1954 are separated by 95 nucleotides DvMF_1954 and DvMF_1955 are separated by 18 nucleotides DvMF_1955 and DvMF_1956 are separated by 78 nucleotides
DvMF_1952: DvMF_1952 - glycosyl transferase family 2 (RefSeq), at 2,412,960 to 2,414,591
_1952
DvMF_1953: DvMF_1953 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,414,670 to 2,415,680
_1953
DvMF_1954: DvMF_1954 - hypothetical protein (RefSeq), at 2,415,776 to 2,416,114
_1954
DvMF_1955: DvMF_1955 - thiamineS protein (RefSeq), at 2,416,133 to 2,416,360
_1955
DvMF_1956: DvMF_1956 - Aldehyde ferredoxin oxidoreductase (RefSeq), at 2,416,439 to 2,418,166
_1956
Position (kb)
2414
2415
2416 Strain fitness (log2 ratio)
-1
0
1 at 2414.187 kb on + strand, within DvMF_1952 at 2414.333 kb on + strand, within DvMF_1952 at 2414.553 kb on - strand at 2414.787 kb on - strand, within DvMF_1953 at 2414.790 kb on + strand, within DvMF_1953 at 2414.904 kb on + strand, within DvMF_1953 at 2415.043 kb on + strand, within DvMF_1953 at 2415.329 kb on - strand, within DvMF_1953 at 2415.508 kb on - strand, within DvMF_1953 at 2415.784 kb on + strand at 2416.123 kb on - strand at 2416.129 kb on + strand at 2416.157 kb on - strand, within DvMF_1955 at 2416.199 kb on + strand, within DvMF_1955 at 2416.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 2,414,187 + DvMF_1952 0.75 -0.5 2,414,333 + DvMF_1952 0.84 -0.8 2,414,553 - -0.1 2,414,787 - DvMF_1953 0.12 +0.4 2,414,790 + DvMF_1953 0.12 -1.2 2,414,904 + DvMF_1953 0.23 -0.1 2,415,043 + DvMF_1953 0.37 -0.0 2,415,329 - DvMF_1953 0.65 +0.3 2,415,508 - DvMF_1953 0.83 -0.3 2,415,784 + -0.5 2,416,123 - +1.0 2,416,129 + -0.8 2,416,157 - DvMF_1955 0.11 +0.5 2,416,199 + DvMF_1955 0.29 -0.7 2,416,496 - +1.5
Or see this region's nucleotide sequence