Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1924 and DvMF_1925 overlap by 16 nucleotides DvMF_1925 and DvMF_1926 are separated by 434 nucleotides DvMF_1926 and DvMF_1927 are separated by 73 nucleotides
DvMF_1924: DvMF_1924 - ABC transporter related (RefSeq), at 2,372,553 to 2,373,755
_1924
DvMF_1925: DvMF_1925 - aminoglycoside phosphotransferase (RefSeq), at 2,373,740 to 2,375,062
_1925
DvMF_1926: DvMF_1926 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,375,497 to 2,375,838
_1926
DvMF_1927: DvMF_1927 - glycosyl transferase family 2 (RefSeq), at 2,375,912 to 2,377,843
_1927
Position (kb)
2373
2374
2375
2376 Strain fitness (log2 ratio)
-1
0
1 at 2373.120 kb on - strand, within DvMF_1924 at 2373.306 kb on + strand, within DvMF_1924 at 2373.411 kb on + strand, within DvMF_1924 at 2373.424 kb on - strand, within DvMF_1924 at 2373.475 kb on - strand, within DvMF_1924 at 2373.489 kb on + strand, within DvMF_1924 at 2373.544 kb on + strand, within DvMF_1924 at 2373.552 kb on - strand, within DvMF_1924 at 2373.792 kb on - strand at 2373.931 kb on + strand, within DvMF_1925 at 2373.946 kb on + strand, within DvMF_1925 at 2373.949 kb on - strand, within DvMF_1925 at 2374.015 kb on + strand, within DvMF_1925 at 2374.136 kb on - strand, within DvMF_1925 at 2374.384 kb on + strand, within DvMF_1925 at 2374.722 kb on - strand, within DvMF_1925 at 2374.973 kb on - strand at 2375.478 kb on + strand at 2375.491 kb on - strand at 2375.570 kb on - strand, within DvMF_1926 at 2375.594 kb on - strand, within DvMF_1926 at 2375.823 kb on + strand at 2375.895 kb on + strand at 2375.925 kb on + strand at 2376.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 2,373,120 - DvMF_1924 0.47 -0.8 2,373,306 + DvMF_1924 0.63 -0.6 2,373,411 + DvMF_1924 0.71 -1.1 2,373,424 - DvMF_1924 0.72 -0.6 2,373,475 - DvMF_1924 0.77 -0.0 2,373,489 + DvMF_1924 0.78 -0.6 2,373,544 + DvMF_1924 0.82 +0.9 2,373,552 - DvMF_1924 0.83 -0.1 2,373,792 - +0.5 2,373,931 + DvMF_1925 0.14 -1.2 2,373,946 + DvMF_1925 0.16 -0.8 2,373,949 - DvMF_1925 0.16 -1.3 2,374,015 + DvMF_1925 0.21 -0.7 2,374,136 - DvMF_1925 0.30 -0.3 2,374,384 + DvMF_1925 0.49 -1.1 2,374,722 - DvMF_1925 0.74 -0.9 2,374,973 - -1.0 2,375,478 + +0.0 2,375,491 - +0.2 2,375,570 - DvMF_1926 0.21 -1.6 2,375,594 - DvMF_1926 0.28 -1.3 2,375,823 + -1.4 2,375,895 + -0.3 2,375,925 + -0.2 2,376,025 - -0.8
Or see this region's nucleotide sequence