Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1784

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1782 and DvMF_1783 are separated by 236 nucleotidesDvMF_1783 and DvMF_1784 are separated by 310 nucleotidesDvMF_1784 and DvMF_1785 are separated by 420 nucleotidesDvMF_1785 and DvMF_1786 are separated by 199 nucleotides DvMF_1782: DvMF_1782 - CheD (RefSeq), at 2,182,252 to 2,182,956 _1782 DvMF_1783: DvMF_1783 - histone family protein DNA-binding protein (RefSeq), at 2,183,193 to 2,183,468 _1783 DvMF_1784: DvMF_1784 - membrane-bound metal-dependent hydrolase (RefSeq), at 2,183,779 to 2,184,876 _1784 DvMF_1785: DvMF_1785 - no description, at 2,185,297 to 2,185,551 _1785 DvMF_1786: DvMF_1786 - protein of unknown function DUF523 (RefSeq), at 2,185,751 to 2,186,758 _1786 Position (kb) 2183 2184 2185Strain fitness (log2 ratio) -2 -1 0 1at 2182.863 kb on + strand, within DvMF_1782at 2182.863 kb on - strand, within DvMF_1782at 2182.920 kb on - strandat 2182.970 kb on + strandat 2182.971 kb on + strandat 2182.985 kb on - strandat 2183.035 kb on - strandat 2183.361 kb on - strand, within DvMF_1783at 2183.397 kb on - strand, within DvMF_1783at 2183.505 kb on + strandat 2183.626 kb on - strandat 2183.902 kb on - strand, within DvMF_1784at 2183.903 kb on + strand, within DvMF_1784at 2184.053 kb on + strand, within DvMF_1784at 2184.093 kb on - strand, within DvMF_1784at 2184.144 kb on + strand, within DvMF_1784at 2184.144 kb on + strand, within DvMF_1784at 2184.152 kb on - strand, within DvMF_1784at 2184.192 kb on + strand, within DvMF_1784at 2184.330 kb on - strand, within DvMF_1784at 2184.359 kb on + strand, within DvMF_1784at 2184.359 kb on + strand, within DvMF_1784at 2184.364 kb on + strand, within DvMF_1784at 2184.367 kb on - strand, within DvMF_1784at 2184.385 kb on + strand, within DvMF_1784at 2184.463 kb on - strand, within DvMF_1784at 2184.573 kb on + strand, within DvMF_1784at 2184.667 kb on + strand, within DvMF_1784at 2184.681 kb on - strand, within DvMF_1784at 2184.710 kb on + strand, within DvMF_1784at 2184.720 kb on + strand, within DvMF_1784at 2184.781 kb on + strandat 2184.781 kb on + strandat 2184.781 kb on + strandat 2184.836 kb on - strandat 2184.998 kb on + strandat 2185.342 kb on - strand, within DvMF_1785at 2185.356 kb on + strand, within DvMF_1785at 2185.364 kb on - strand, within DvMF_1785

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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2,182,863 + DvMF_1782 0.87 -1.4
2,182,863 - DvMF_1782 0.87 -1.0
2,182,920 - -1.0
2,182,970 + -2.6
2,182,971 + -1.3
2,182,985 - -1.8
2,183,035 - -0.4
2,183,361 - DvMF_1783 0.61 -0.4
2,183,397 - DvMF_1783 0.74 +0.9
2,183,505 + +1.3
2,183,626 - -0.2
2,183,902 - DvMF_1784 0.11 -1.6
2,183,903 + DvMF_1784 0.11 -1.3
2,184,053 + DvMF_1784 0.25 +0.6
2,184,093 - DvMF_1784 0.29 -1.1
2,184,144 + DvMF_1784 0.33 -0.6
2,184,144 + DvMF_1784 0.33 -0.5
2,184,152 - DvMF_1784 0.34 -0.6
2,184,192 + DvMF_1784 0.38 -0.7
2,184,330 - DvMF_1784 0.50 +0.6
2,184,359 + DvMF_1784 0.53 -0.4
2,184,359 + DvMF_1784 0.53 -0.8
2,184,364 + DvMF_1784 0.53 +0.6
2,184,367 - DvMF_1784 0.54 +0.3
2,184,385 + DvMF_1784 0.55 -0.6
2,184,463 - DvMF_1784 0.62 -0.6
2,184,573 + DvMF_1784 0.72 +1.3
2,184,667 + DvMF_1784 0.81 -0.6
2,184,681 - DvMF_1784 0.82 -0.2
2,184,710 + DvMF_1784 0.85 -0.5
2,184,720 + DvMF_1784 0.86 -0.0
2,184,781 + -0.8
2,184,781 + -0.8
2,184,781 + -0.4
2,184,836 - +0.7
2,184,998 + -0.3
2,185,342 - DvMF_1785 0.18 -0.7
2,185,356 + DvMF_1785 0.23 -0.0
2,185,364 - DvMF_1785 0.26 -0.9

Or see this region's nucleotide sequence