Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1781 and DvMF_1782 are separated by 204 nucleotides DvMF_1782 and DvMF_1783 are separated by 236 nucleotides DvMF_1783 and DvMF_1784 are separated by 310 nucleotides
DvMF_1781: DvMF_1781 - glycosyl transferase family 8 (RefSeq), at 2,181,199 to 2,182,047
_1781
DvMF_1782: DvMF_1782 - CheD (RefSeq), at 2,182,252 to 2,182,956
_1782
DvMF_1783: DvMF_1783 - histone family protein DNA-binding protein (RefSeq), at 2,183,193 to 2,183,468
_1783
DvMF_1784: DvMF_1784 - membrane-bound metal-dependent hydrolase (RefSeq), at 2,183,779 to 2,184,876
_1784
Position (kb)
2182
2183 Strain fitness (log2 ratio)
-2
-1
0
1 at 2181.252 kb on + strand at 2181.273 kb on + strand at 2181.472 kb on + strand, within DvMF_1781 at 2181.544 kb on - strand, within DvMF_1781 at 2181.671 kb on + strand, within DvMF_1781 at 2181.679 kb on - strand, within DvMF_1781 at 2181.679 kb on - strand, within DvMF_1781 at 2181.714 kb on - strand, within DvMF_1781 at 2181.793 kb on + strand, within DvMF_1781 at 2181.861 kb on + strand, within DvMF_1781 at 2182.093 kb on - strand at 2182.120 kb on + strand at 2182.238 kb on - strand at 2182.292 kb on - strand at 2182.480 kb on - strand, within DvMF_1782 at 2182.605 kb on + strand, within DvMF_1782 at 2182.863 kb on + strand, within DvMF_1782 at 2182.863 kb on - strand, within DvMF_1782 at 2182.920 kb on - strand at 2182.970 kb on + strand at 2182.971 kb on + strand at 2182.985 kb on - strand at 2183.035 kb on - strand at 2183.361 kb on - strand, within DvMF_1783 at 2183.397 kb on - strand, within DvMF_1783 at 2183.505 kb on + strand at 2183.626 kb on - strand at 2183.902 kb on - strand, within DvMF_1784 at 2183.903 kb on + strand, within DvMF_1784
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 2,181,252 + +0.8 2,181,273 + -1.1 2,181,472 + DvMF_1781 0.32 -0.8 2,181,544 - DvMF_1781 0.41 -0.2 2,181,671 + DvMF_1781 0.56 -0.7 2,181,679 - DvMF_1781 0.57 -0.4 2,181,679 - DvMF_1781 0.57 -1.4 2,181,714 - DvMF_1781 0.61 -0.3 2,181,793 + DvMF_1781 0.70 -0.5 2,181,861 + DvMF_1781 0.78 -2.0 2,182,093 - -0.3 2,182,120 + +0.2 2,182,238 - -0.1 2,182,292 - +0.9 2,182,480 - DvMF_1782 0.32 -1.2 2,182,605 + DvMF_1782 0.50 -1.3 2,182,863 + DvMF_1782 0.87 -1.4 2,182,863 - DvMF_1782 0.87 -1.0 2,182,920 - -1.0 2,182,970 + -2.6 2,182,971 + -1.3 2,182,985 - -1.8 2,183,035 - -0.4 2,183,361 - DvMF_1783 0.61 -0.4 2,183,397 - DvMF_1783 0.74 +0.9 2,183,505 + +1.3 2,183,626 - -0.2 2,183,902 - DvMF_1784 0.11 -1.6 2,183,903 + DvMF_1784 0.11 -1.3
Or see this region's nucleotide sequence