Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1751 and DvMF_1752 are separated by 303 nucleotides DvMF_1752 and DvMF_1753 are separated by 453 nucleotides DvMF_1753 and DvMF_1754 are separated by 140 nucleotides
DvMF_1751: DvMF_1751 - fructose-bisphosphate aldolase (RefSeq), at 2,139,616 to 2,140,413
_1751
DvMF_1752: DvMF_1752 - hypothetical protein (RefSeq), at 2,140,717 to 2,140,821
_1752
DvMF_1753: DvMF_1753 - hypothetical protein (RefSeq), at 2,141,275 to 2,141,832
_1753
DvMF_1754: DvMF_1754 - diguanylate phosphodiesterase (RefSeq), at 2,141,973 to 2,143,268
_1754
Position (kb)
2141
2142 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2140.831 kb on + strand at 2140.839 kb on - strand at 2140.839 kb on - strand at 2141.194 kb on + strand at 2141.277 kb on + strand at 2141.285 kb on - strand at 2141.295 kb on - strand at 2141.295 kb on - strand at 2141.338 kb on + strand, within DvMF_1753 at 2141.393 kb on + strand, within DvMF_1753 at 2141.408 kb on + strand, within DvMF_1753 at 2141.500 kb on + strand, within DvMF_1753 at 2141.500 kb on + strand, within DvMF_1753 at 2141.500 kb on + strand, within DvMF_1753 at 2141.500 kb on + strand, within DvMF_1753 at 2141.508 kb on - strand, within DvMF_1753 at 2141.768 kb on - strand, within DvMF_1753 at 2142.337 kb on + strand, within DvMF_1754 at 2142.346 kb on + strand, within DvMF_1754
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 2,140,831 + +0.4 2,140,839 - +2.1 2,140,839 - +2.2 2,141,194 + -1.2 2,141,277 + -2.3 2,141,285 - -0.7 2,141,295 - -0.3 2,141,295 - +1.2 2,141,338 + DvMF_1753 0.11 -1.0 2,141,393 + DvMF_1753 0.21 -3.8 2,141,408 + DvMF_1753 0.24 -0.8 2,141,500 + DvMF_1753 0.40 -0.4 2,141,500 + DvMF_1753 0.40 -0.9 2,141,500 + DvMF_1753 0.40 -0.2 2,141,500 + DvMF_1753 0.40 -1.1 2,141,508 - DvMF_1753 0.42 -1.5 2,141,768 - DvMF_1753 0.88 -2.0 2,142,337 + DvMF_1754 0.28 -0.7 2,142,346 + DvMF_1754 0.29 +0.1
Or see this region's nucleotide sequence