Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1737

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1736 and DvMF_1737 are separated by 239 nucleotidesDvMF_1737 and DvMF_1738 are separated by 116 nucleotides DvMF_1736: DvMF_1736 - serine/threonine protein kinase (RefSeq), at 2,122,006 to 2,123,967 _1736 DvMF_1737: DvMF_1737 - metallophosphoesterase (RefSeq), at 2,124,207 to 2,124,935 _1737 DvMF_1738: DvMF_1738 - hypothetical protein (RefSeq), at 2,125,052 to 2,125,678 _1738 Position (kb) 2124 2125Strain fitness (log2 ratio) -2 -1 0 1at 2123.343 kb on - strand, within DvMF_1736at 2123.437 kb on + strand, within DvMF_1736at 2123.651 kb on + strand, within DvMF_1736at 2123.839 kb on - strandat 2124.081 kb on + strandat 2124.089 kb on - strandat 2124.201 kb on - strandat 2124.213 kb on - strandat 2124.470 kb on + strand, within DvMF_1737at 2124.501 kb on + strand, within DvMF_1737at 2124.568 kb on - strand, within DvMF_1737at 2124.797 kb on - strand, within DvMF_1737at 2125.373 kb on - strand, within DvMF_1738at 2125.439 kb on - strand, within DvMF_1738at 2125.439 kb on - strand, within DvMF_1738at 2125.454 kb on - strand, within DvMF_1738at 2125.464 kb on - strand, within DvMF_1738at 2125.477 kb on - strand, within DvMF_1738at 2125.548 kb on + strand, within DvMF_1738at 2125.715 kb on + strandat 2125.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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2,123,343 - DvMF_1736 0.68 -0.9
2,123,437 + DvMF_1736 0.73 -1.9
2,123,651 + DvMF_1736 0.84 -0.8
2,123,839 - -0.0
2,124,081 + -0.2
2,124,089 - -0.2
2,124,201 - -0.2
2,124,213 - -0.6
2,124,470 + DvMF_1737 0.36 -0.6
2,124,501 + DvMF_1737 0.40 -0.8
2,124,568 - DvMF_1737 0.50 +0.1
2,124,797 - DvMF_1737 0.81 +0.1
2,125,373 - DvMF_1738 0.51 -0.8
2,125,439 - DvMF_1738 0.62 +0.2
2,125,439 - DvMF_1738 0.62 -0.7
2,125,454 - DvMF_1738 0.64 +0.2
2,125,464 - DvMF_1738 0.66 -0.8
2,125,477 - DvMF_1738 0.68 +0.1
2,125,548 + DvMF_1738 0.79 -0.4
2,125,715 + -1.1
2,125,776 + -0.0

Or see this region's nucleotide sequence