Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1690 and DvMF_1691 are separated by 227 nucleotides DvMF_1691 and DvMF_1692 are separated by 296 nucleotides DvMF_1692 and DvMF_1693 are separated by 454 nucleotides
DvMF_1690: DvMF_1690 - polysaccharide export protein (RefSeq), at 2,057,686 to 2,059,362
_1690
DvMF_1691: DvMF_1691 - hypothetical protein (RefSeq), at 2,059,590 to 2,059,991
_1691
DvMF_1692: DvMF_1692 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,060,288 to 2,061,853
_1692
DvMF_1693: DvMF_1693 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 2,062,308 to 2,064,083
_1693
Position (kb)
2060
2061
2062 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2059.395 kb on + strand at 2059.547 kb on - strand at 2059.917 kb on + strand, within DvMF_1691 at 2060.222 kb on + strand at 2060.376 kb on + strand at 2060.531 kb on - strand, within DvMF_1692 at 2060.947 kb on - strand, within DvMF_1692 at 2061.013 kb on + strand, within DvMF_1692 at 2061.243 kb on - strand, within DvMF_1692 at 2061.413 kb on - strand, within DvMF_1692 at 2061.433 kb on - strand, within DvMF_1692 at 2061.493 kb on + strand, within DvMF_1692 at 2061.529 kb on - strand, within DvMF_1692 at 2061.698 kb on + strand at 2061.706 kb on - strand at 2061.748 kb on - strand at 2061.763 kb on + strand at 2061.763 kb on + strand at 2061.878 kb on + strand at 2061.939 kb on + strand at 2062.372 kb on - strand at 2062.417 kb on + strand at 2062.439 kb on + strand at 2062.643 kb on + strand, within DvMF_1693 at 2062.675 kb on + strand, within DvMF_1693 at 2062.748 kb on - strand, within DvMF_1693
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 2,059,395 + -0.6 2,059,547 - -0.1 2,059,917 + DvMF_1691 0.81 -0.7 2,060,222 + +0.4 2,060,376 + -1.7 2,060,531 - DvMF_1692 0.16 -1.1 2,060,947 - DvMF_1692 0.42 -1.2 2,061,013 + DvMF_1692 0.46 -0.8 2,061,243 - DvMF_1692 0.61 -0.3 2,061,413 - DvMF_1692 0.72 -0.9 2,061,433 - DvMF_1692 0.73 -2.3 2,061,493 + DvMF_1692 0.77 -1.0 2,061,529 - DvMF_1692 0.79 -1.1 2,061,698 + -3.0 2,061,706 - -0.7 2,061,748 - -0.3 2,061,763 + -2.0 2,061,763 + -0.3 2,061,878 + -0.6 2,061,939 + -3.2 2,062,372 - -1.9 2,062,417 + -1.5 2,062,439 + -2.9 2,062,643 + DvMF_1693 0.19 -1.9 2,062,675 + DvMF_1693 0.21 -1.3 2,062,748 - DvMF_1693 0.25 -2.1
Or see this region's nucleotide sequence