Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1529

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1528 and DvMF_1529 are separated by 72 nucleotidesDvMF_1529 and DvMF_1530 are separated by 371 nucleotides DvMF_1528: DvMF_1528 - phospholipase D/Transphosphatidylase (RefSeq), at 1,883,223 to 1,884,692 _1528 DvMF_1529: DvMF_1529 - UspA domain protein (RefSeq), at 1,884,765 to 1,885,190 _1529 DvMF_1530: DvMF_1530 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,885,562 to 1,888,252 _1530 Position (kb) 1884 1885 1886Strain fitness (log2 ratio) -3 -2 -1 0 1at 1883.833 kb on - strand, within DvMF_1528at 1883.908 kb on + strand, within DvMF_1528at 1883.943 kb on + strand, within DvMF_1528at 1883.944 kb on - strand, within DvMF_1528at 1883.960 kb on + strand, within DvMF_1528at 1884.231 kb on + strand, within DvMF_1528at 1884.255 kb on + strand, within DvMF_1528at 1884.268 kb on - strand, within DvMF_1528at 1884.273 kb on - strand, within DvMF_1528at 1884.280 kb on + strand, within DvMF_1528at 1884.285 kb on + strand, within DvMF_1528at 1884.346 kb on - strand, within DvMF_1528at 1884.536 kb on + strand, within DvMF_1528at 1884.562 kb on - strandat 1884.634 kb on - strandat 1884.719 kb on - strandat 1884.918 kb on - strand, within DvMF_1529at 1884.951 kb on - strand, within DvMF_1529at 1885.028 kb on - strand, within DvMF_1529at 1885.209 kb on - strandat 1885.211 kb on - strandat 1885.335 kb on + strandat 1885.901 kb on + strand, within DvMF_1530at 1886.160 kb on + strand, within DvMF_1530

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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1,883,833 - DvMF_1528 0.41 -0.4
1,883,908 + DvMF_1528 0.47 -0.8
1,883,943 + DvMF_1528 0.49 -2.1
1,883,944 - DvMF_1528 0.49 -0.4
1,883,960 + DvMF_1528 0.50 -3.5
1,884,231 + DvMF_1528 0.69 -0.0
1,884,255 + DvMF_1528 0.70 -0.7
1,884,268 - DvMF_1528 0.71 -1.0
1,884,273 - DvMF_1528 0.71 +0.0
1,884,280 + DvMF_1528 0.72 -0.2
1,884,285 + DvMF_1528 0.72 -2.8
1,884,346 - DvMF_1528 0.76 +1.1
1,884,536 + DvMF_1528 0.89 -2.3
1,884,562 - -0.5
1,884,634 - +0.3
1,884,719 - +0.3
1,884,918 - DvMF_1529 0.36 +0.4
1,884,951 - DvMF_1529 0.44 -0.2
1,885,028 - DvMF_1529 0.62 +0.4
1,885,209 - -0.6
1,885,211 - +0.0
1,885,335 + -0.2
1,885,901 + DvMF_1530 0.13 +0.1
1,886,160 + DvMF_1530 0.22 -0.2

Or see this region's nucleotide sequence