Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1482

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1480 and DvMF_1481 overlap by 8 nucleotidesDvMF_1481 and DvMF_1482 overlap by 4 nucleotidesDvMF_1482 and DvMF_1483 overlap by 4 nucleotides DvMF_1480: DvMF_1480 - ABC transporter related (RefSeq), at 1,814,333 to 1,815,175 _1480 DvMF_1481: DvMF_1481 - ABC transporter related (RefSeq), at 1,815,168 to 1,815,947 _1481 DvMF_1482: DvMF_1482 - inner-membrane translocator (RefSeq), at 1,815,944 to 1,817,026 _1482 DvMF_1483: DvMF_1483 - inner-membrane translocator (RefSeq), at 1,817,023 to 1,817,910 _1483 Position (kb) 1815 1816 1817 1818Strain fitness (log2 ratio) -3 -2 -1 0 1at 1815.001 kb on - strand, within DvMF_1480at 1815.039 kb on + strand, within DvMF_1480at 1815.205 kb on - strandat 1815.218 kb on + strandat 1815.218 kb on + strandat 1815.365 kb on + strand, within DvMF_1481at 1815.492 kb on - strand, within DvMF_1481at 1815.612 kb on - strand, within DvMF_1481at 1815.646 kb on + strand, within DvMF_1481at 1815.690 kb on + strand, within DvMF_1481at 1815.813 kb on - strand, within DvMF_1481at 1815.859 kb on + strand, within DvMF_1481at 1816.159 kb on + strand, within DvMF_1482at 1816.318 kb on - strand, within DvMF_1482at 1816.349 kb on - strand, within DvMF_1482at 1816.422 kb on + strand, within DvMF_1482at 1816.482 kb on + strand, within DvMF_1482at 1816.596 kb on + strand, within DvMF_1482at 1816.704 kb on - strand, within DvMF_1482at 1816.798 kb on + strand, within DvMF_1482at 1816.943 kb on + strandat 1817.011 kb on + strandat 1817.243 kb on - strand, within DvMF_1483at 1817.465 kb on + strand, within DvMF_1483at 1817.535 kb on + strand, within DvMF_1483at 1817.551 kb on + strand, within DvMF_1483at 1817.662 kb on - strand, within DvMF_1483at 1817.838 kb on - strandat 1817.848 kb on - strandat 1817.878 kb on - strandat 1817.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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1,815,001 - DvMF_1480 0.79 -0.5
1,815,039 + DvMF_1480 0.84 -2.9
1,815,205 - -0.4
1,815,218 + +0.4
1,815,218 + +0.8
1,815,365 + DvMF_1481 0.25 -0.8
1,815,492 - DvMF_1481 0.42 -2.0
1,815,612 - DvMF_1481 0.57 -1.4
1,815,646 + DvMF_1481 0.61 -0.5
1,815,690 + DvMF_1481 0.67 -0.9
1,815,813 - DvMF_1481 0.83 -0.8
1,815,859 + DvMF_1481 0.89 -0.6
1,816,159 + DvMF_1482 0.20 -0.8
1,816,318 - DvMF_1482 0.35 -0.6
1,816,349 - DvMF_1482 0.37 -1.3
1,816,422 + DvMF_1482 0.44 -0.8
1,816,482 + DvMF_1482 0.50 -0.8
1,816,596 + DvMF_1482 0.60 -1.0
1,816,704 - DvMF_1482 0.70 -1.1
1,816,798 + DvMF_1482 0.79 -1.0
1,816,943 + -1.3
1,817,011 + -0.0
1,817,243 - DvMF_1483 0.25 -0.6
1,817,465 + DvMF_1483 0.50 -1.4
1,817,535 + DvMF_1483 0.58 -0.5
1,817,551 + DvMF_1483 0.59 -1.3
1,817,662 - DvMF_1483 0.72 -1.1
1,817,838 - +0.1
1,817,848 - -0.5
1,817,878 - -0.7
1,817,953 + -1.2

Or see this region's nucleotide sequence