Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1332

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1331 and DvMF_1332 are separated by 558 nucleotidesDvMF_1332 and DvMF_1333 are separated by 284 nucleotides DvMF_1331: DvMF_1331 - protein of unknown function DUF151 (RefSeq), at 1,626,176 to 1,626,904 _1331 DvMF_1332: DvMF_1332 - hypothetical protein (RefSeq), at 1,627,463 to 1,628,122 _1332 DvMF_1333: DvMF_1333 - hypothetical protein (RefSeq), at 1,628,407 to 1,628,994 _1333 Position (kb) 1627 1628 1629Strain fitness (log2 ratio) -1 0 1 2at 1626.495 kb on + strand, within DvMF_1331at 1626.672 kb on - strand, within DvMF_1331at 1626.995 kb on - strandat 1627.313 kb on + strandat 1627.733 kb on + strand, within DvMF_1332at 1627.835 kb on + strand, within DvMF_1332at 1628.282 kb on - strandat 1628.507 kb on - strand, within DvMF_1333at 1628.974 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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1,626,495 + DvMF_1331 0.44 +0.1
1,626,672 - DvMF_1331 0.68 -0.5
1,626,995 - -0.7
1,627,313 + -0.6
1,627,733 + DvMF_1332 0.41 -0.6
1,627,835 + DvMF_1332 0.56 +2.0
1,628,282 - -1.3
1,628,507 - DvMF_1333 0.17 -0.4
1,628,974 + -0.1

Or see this region's nucleotide sequence