Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0867 and DvMF_0868 are separated by 530 nucleotides DvMF_0868 and DvMF_0869 are separated by 128 nucleotides DvMF_0869 and DvMF_0870 are separated by 108 nucleotides
DvMF_0867: DvMF_0867 - Redoxin domain protein (RefSeq), at 1,045,332 to 1,045,844
_0867
DvMF_0868: DvMF_0868 - hypothetical protein (RefSeq), at 1,046,375 to 1,046,848
_0868
DvMF_0869: DvMF_0869 - hypothetical protein (RefSeq), at 1,046,977 to 1,047,213
_0869
DvMF_0870: DvMF_0870 - RNA binding S1 domain protein (RefSeq), at 1,047,322 to 1,049,592
_0870
Position (kb)
1046
1047 Strain fitness (log2 ratio)
-1
0
1 at 1045.501 kb on + strand, within DvMF_0867 at 1045.558 kb on + strand, within DvMF_0867 at 1045.621 kb on - strand, within DvMF_0867 at 1045.810 kb on + strand at 1045.823 kb on - strand at 1046.022 kb on - strand at 1046.046 kb on + strand at 1046.054 kb on - strand at 1046.064 kb on - strand at 1046.064 kb on - strand at 1046.064 kb on - strand at 1046.066 kb on + strand at 1046.074 kb on - strand at 1046.074 kb on - strand at 1046.074 kb on - strand at 1046.076 kb on + strand at 1046.224 kb on + strand at 1046.273 kb on + strand at 1046.281 kb on - strand at 1046.791 kb on + strand, within DvMF_0868 at 1047.024 kb on - strand, within DvMF_0869 at 1047.168 kb on - strand, within DvMF_0869 at 1047.216 kb on - strand at 1047.246 kb on - strand at 1047.423 kb on - strand at 1047.679 kb on + strand, within DvMF_0870 at 1047.712 kb on + strand, within DvMF_0870 at 1047.772 kb on - strand, within DvMF_0870 at 1047.777 kb on + strand, within DvMF_0870 at 1047.815 kb on + strand, within DvMF_0870
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 1,045,501 + DvMF_0867 0.33 +0.2 1,045,558 + DvMF_0867 0.44 -0.6 1,045,621 - DvMF_0867 0.56 +0.6 1,045,810 + +0.0 1,045,823 - -0.9 1,046,022 - +0.6 1,046,046 + +0.7 1,046,054 - -0.6 1,046,064 - -0.9 1,046,064 - -0.4 1,046,064 - -0.4 1,046,066 + -1.1 1,046,074 - -0.4 1,046,074 - -0.4 1,046,074 - +0.2 1,046,076 + -1.0 1,046,224 + -1.2 1,046,273 + -0.6 1,046,281 - -0.5 1,046,791 + DvMF_0868 0.88 -0.5 1,047,024 - DvMF_0869 0.20 -0.2 1,047,168 - DvMF_0869 0.81 -0.2 1,047,216 - -0.6 1,047,246 - +0.4 1,047,423 - +0.0 1,047,679 + DvMF_0870 0.16 -0.5 1,047,712 + DvMF_0870 0.17 -0.5 1,047,772 - DvMF_0870 0.20 -0.7 1,047,777 + DvMF_0870 0.20 -0.6 1,047,815 + DvMF_0870 0.22 -0.3
Or see this region's nucleotide sequence