Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0838

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0837 and DvMF_0838 are separated by 56 nucleotidesDvMF_0838 and DvMF_0839 are separated by 279 nucleotides DvMF_0837: DvMF_0837 - 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq), at 1,011,110 to 1,012,198 _0837 DvMF_0838: DvMF_0838 - hypothetical protein (RefSeq), at 1,012,255 to 1,013,007 _0838 DvMF_0839: DvMF_0839 - Asparaginase (RefSeq), at 1,013,287 to 1,014,276 _0839 Position (kb) 1012 1013 1014Strain fitness (log2 ratio) -2 -1 0 1at 1011.398 kb on - strand, within DvMF_0837at 1011.737 kb on - strand, within DvMF_0837at 1012.247 kb on - strandat 1012.267 kb on + strandat 1012.365 kb on - strand, within DvMF_0838at 1012.635 kb on + strand, within DvMF_0838at 1012.933 kb on - strandat 1013.331 kb on + strandat 1013.338 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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1,011,398 - DvMF_0837 0.26 -2.4
1,011,737 - DvMF_0837 0.58 +0.3
1,012,247 - -0.0
1,012,267 + -0.9
1,012,365 - DvMF_0838 0.15 +0.5
1,012,635 + DvMF_0838 0.50 -0.3
1,012,933 - -0.3
1,013,331 + -0.6
1,013,338 + -0.4

Or see this region's nucleotide sequence