Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0821

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0819 and DvMF_0820 overlap by 11 nucleotidesDvMF_0820 and DvMF_0821 are separated by 138 nucleotidesDvMF_0821 and DvMF_0822 are separated by 922 nucleotides DvMF_0819: DvMF_0819 - OmpA/MotB domain protein (RefSeq), at 987,821 to 988,555 _0819 DvMF_0820: DvMF_0820 - MotA/TolQ/ExbB proton channel (RefSeq), at 988,545 to 989,300 _0820 DvMF_0821: DvMF_0821 - purine nucleoside phosphorylase (RefSeq), at 989,439 to 990,284 _0821 DvMF_0822: DvMF_0822 - GTP-binding protein TypA (RefSeq), at 991,207 to 993,045 _0822 Position (kb) 989 990 991Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 988.720 kb on + strand, within DvMF_0820at 989.240 kb on + strandat 989.243 kb on - strandat 989.546 kb on - strand, within DvMF_0821at 989.680 kb on + strand, within DvMF_0821at 989.891 kb on - strand, within DvMF_0821at 990.154 kb on + strand, within DvMF_0821at 990.187 kb on + strand, within DvMF_0821at 990.279 kb on + strandat 990.279 kb on + strandat 990.291 kb on + strandat 990.299 kb on - strandat 990.321 kb on - strandat 990.582 kb on + strandat 990.592 kb on + strandat 990.609 kb on + strandat 990.826 kb on + strandat 990.874 kb on - strandat 991.159 kb on + strandat 991.232 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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988,720 + DvMF_0820 0.23 -0.8
989,240 + -2.0
989,243 - +0.5
989,546 - DvMF_0821 0.13 -1.4
989,680 + DvMF_0821 0.28 -3.8
989,891 - DvMF_0821 0.53 -0.4
990,154 + DvMF_0821 0.85 -1.7
990,187 + DvMF_0821 0.88 -1.2
990,279 + -0.4
990,279 + -1.4
990,291 + -1.5
990,299 - -0.4
990,321 - -0.4
990,582 + -1.3
990,592 + -1.5
990,609 + -0.7
990,826 + -3.5
990,874 - -3.8
991,159 + -0.6
991,232 + +0.6

Or see this region's nucleotide sequence