Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0796

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0795 and DvMF_0796 are separated by 299 nucleotidesDvMF_0796 and DvMF_0797 are separated by 195 nucleotides DvMF_0795: DvMF_0795 - Calcium-binding EF-hand-containing protein (RefSeq), at 958,941 to 960,131 _0795 DvMF_0796: DvMF_0796 - Calcium-binding EF-hand-containing protein (RefSeq), at 960,431 to 961,423 _0796 DvMF_0797: DvMF_0797 - thiamine-phosphate pyrophosphorylase (RefSeq), at 961,619 to 962,272 _0797 Position (kb) 960 961 962Strain fitness (log2 ratio) -2 -1 0 1at 959.519 kb on - strand, within DvMF_0795at 959.740 kb on - strand, within DvMF_0795at 959.827 kb on + strand, within DvMF_0795at 959.866 kb on - strand, within DvMF_0795at 959.948 kb on - strand, within DvMF_0795at 960.411 kb on + strandat 960.749 kb on + strand, within DvMF_0796at 960.986 kb on - strand, within DvMF_0796at 960.996 kb on - strand, within DvMF_0796at 961.230 kb on - strand, within DvMF_0796at 961.373 kb on - strandat 961.464 kb on - strandat 961.490 kb on + strandat 961.915 kb on - strand, within DvMF_0797at 962.031 kb on - strand, within DvMF_0797at 962.064 kb on - strand, within DvMF_0797at 962.183 kb on + strand, within DvMF_0797at 962.417 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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959,519 - DvMF_0795 0.49 -0.2
959,740 - DvMF_0795 0.67 -0.0
959,827 + DvMF_0795 0.74 -0.5
959,866 - DvMF_0795 0.78 -0.0
959,948 - DvMF_0795 0.85 -1.2
960,411 + -0.5
960,749 + DvMF_0796 0.32 -0.4
960,986 - DvMF_0796 0.56 -2.3
960,996 - DvMF_0796 0.57 -1.2
961,230 - DvMF_0796 0.80 -1.6
961,373 - -0.2
961,464 - -0.7
961,490 + -0.6
961,915 - DvMF_0797 0.45 -0.1
962,031 - DvMF_0797 0.63 -0.4
962,064 - DvMF_0797 0.68 +0.3
962,183 + DvMF_0797 0.86 -0.4
962,417 - +0.0

Or see this region's nucleotide sequence