Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0658

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0657 and DvMF_0658 overlap by 4 nucleotidesDvMF_0658 and DvMF_0659 are separated by 72 nucleotides DvMF_0657: DvMF_0657 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 792,406 to 793,299 _0657 DvMF_0658: DvMF_0658 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 793,296 to 794,129 _0658 DvMF_0659: DvMF_0659 - hypothetical protein (RefSeq), at 794,202 to 795,071 _0659 Position (kb) 793 794 795Strain fitness (log2 ratio) -2 -1 0 1at 792.409 kb on + strandat 792.610 kb on + strand, within DvMF_0657at 792.658 kb on + strand, within DvMF_0657at 792.686 kb on - strand, within DvMF_0657at 792.910 kb on - strand, within DvMF_0657at 793.083 kb on + strand, within DvMF_0657at 793.181 kb on + strand, within DvMF_0657at 793.226 kb on - strandat 793.391 kb on + strand, within DvMF_0658at 793.470 kb on - strand, within DvMF_0658at 793.991 kb on + strand, within DvMF_0658at 794.389 kb on - strand, within DvMF_0659at 794.520 kb on + strand, within DvMF_0659at 794.912 kb on + strand, within DvMF_0659at 794.968 kb on - strand, within DvMF_0659at 795.120 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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792,409 + -0.6
792,610 + DvMF_0657 0.23 -0.6
792,658 + DvMF_0657 0.28 -0.3
792,686 - DvMF_0657 0.31 -0.9
792,910 - DvMF_0657 0.56 -0.3
793,083 + DvMF_0657 0.76 +0.2
793,181 + DvMF_0657 0.87 -0.6
793,226 - -0.1
793,391 + DvMF_0658 0.11 -0.4
793,470 - DvMF_0658 0.21 -2.1
793,991 + DvMF_0658 0.83 -1.2
794,389 - DvMF_0659 0.21 -0.5
794,520 + DvMF_0659 0.37 +0.1
794,912 + DvMF_0659 0.82 -0.6
794,968 - DvMF_0659 0.88 -0.4
795,120 + -1.3

Or see this region's nucleotide sequence