Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0628

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0627 and DvMF_0628 are separated by 598 nucleotidesDvMF_0628 and DvMF_0629 are separated by 9 nucleotides DvMF_0627: DvMF_0627 - Sel1 domain protein repeat-containing protein (RefSeq), at 748,941 to 749,627 _0627 DvMF_0628: DvMF_0628 - protein of unknown function DUF214 (RefSeq), at 750,226 to 751,401 _0628 DvMF_0629: DvMF_0629 - protein of unknown function DUF214 (RefSeq), at 751,411 to 752,562 _0629 Position (kb) 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1at 749.258 kb on + strand, within DvMF_0627at 749.353 kb on - strand, within DvMF_0627at 749.442 kb on + strand, within DvMF_0627at 749.684 kb on - strandat 749.844 kb on + strandat 750.356 kb on - strand, within DvMF_0628at 750.435 kb on - strand, within DvMF_0628at 750.617 kb on + strand, within DvMF_0628at 750.694 kb on - strand, within DvMF_0628at 750.902 kb on - strand, within DvMF_0628at 751.208 kb on + strand, within DvMF_0628at 751.277 kb on + strand, within DvMF_0628at 751.622 kb on + strand, within DvMF_0629at 751.892 kb on - strand, within DvMF_0629at 751.953 kb on - strand, within DvMF_0629at 752.098 kb on - strand, within DvMF_0629at 752.234 kb on - strand, within DvMF_0629

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
remove
749,258 + DvMF_0627 0.46 -0.6
749,353 - DvMF_0627 0.60 +0.8
749,442 + DvMF_0627 0.73 -1.0
749,684 - -0.1
749,844 + -0.3
750,356 - DvMF_0628 0.11 +0.3
750,435 - DvMF_0628 0.18 -0.3
750,617 + DvMF_0628 0.33 +0.0
750,694 - DvMF_0628 0.40 +0.7
750,902 - DvMF_0628 0.57 +0.4
751,208 + DvMF_0628 0.84 -1.7
751,277 + DvMF_0628 0.89 -3.1
751,622 + DvMF_0629 0.18 -1.0
751,892 - DvMF_0629 0.42 -0.4
751,953 - DvMF_0629 0.47 -1.3
752,098 - DvMF_0629 0.60 -0.8
752,234 - DvMF_0629 0.71 -0.5

Or see this region's nucleotide sequence