Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0579

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgatB and DvMF_0579 are separated by 219 nucleotidesDvMF_0579 and DvMF_0580 are separated by 20 nucleotides DvMF_0578: gatB - aspartyl/glutamyl-tRNA amidotransferase subunit B (RefSeq), at 685,398 to 686,828 gatB DvMF_0579: DvMF_0579 - hypothetical protein (RefSeq), at 687,048 to 687,716 _0579 DvMF_0580: DvMF_0580 - hypothetical protein (RefSeq), at 687,737 to 689,482 _0580 Position (kb) 687 688Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 687.044 kb on + strandat 687.052 kb on - strandat 687.289 kb on - strand, within DvMF_0579at 687.306 kb on + strand, within DvMF_0579at 687.321 kb on - strand, within DvMF_0579at 687.724 kb on + strandat 687.855 kb on - strandat 687.899 kb on - strandat 688.573 kb on - strand, within DvMF_0580at 688.670 kb on - strand, within DvMF_0580

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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687,044 + -1.7
687,052 - -0.1
687,289 - DvMF_0579 0.36 -3.8
687,306 + DvMF_0579 0.39 -1.1
687,321 - DvMF_0579 0.41 -0.9
687,724 + -4.7
687,855 - +0.2
687,899 - +0.0
688,573 - DvMF_0580 0.48 -0.2
688,670 - DvMF_0580 0.53 -1.0

Or see this region's nucleotide sequence