Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0564

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0563 and DvMF_0564 are separated by 102 nucleotidesDvMF_0564 and aspA overlap by 4 nucleotides DvMF_0563: DvMF_0563 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 662,862 to 665,171 _0563 DvMF_0564: DvMF_0564 - cyclase family protein (RefSeq), at 665,274 to 666,008 _0564 DvMF_0565: aspA - aspartate ammonia-lyase (RefSeq), at 666,005 to 667,570 aspA Position (kb) 665 666 667Strain fitness (log2 ratio) -3 -2 -1 0 1at 664.950 kb on + strandat 665.226 kb on + strandat 665.257 kb on + strandat 665.378 kb on - strand, within DvMF_0564at 665.414 kb on + strand, within DvMF_0564at 665.593 kb on + strand, within DvMF_0564at 665.884 kb on - strand, within DvMF_0564at 665.884 kb on - strand, within DvMF_0564at 666.028 kb on + strandat 666.063 kb on - strandat 666.089 kb on + strandat 666.110 kb on - strandat 666.147 kb on + strandat 666.149 kb on + strandat 666.392 kb on - strand, within aspAat 666.711 kb on + strand, within aspA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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664,950 + +0.0
665,226 + -0.7
665,257 + -3.1
665,378 - DvMF_0564 0.14 -0.8
665,414 + DvMF_0564 0.19 -1.8
665,593 + DvMF_0564 0.43 -0.6
665,884 - DvMF_0564 0.83 -1.0
665,884 - DvMF_0564 0.83 -1.7
666,028 + +0.1
666,063 - -0.8
666,089 + +1.0
666,110 - +0.7
666,147 + -1.5
666,149 + -3.3
666,392 - aspA DvMF_0565 0.25 -0.6
666,711 + aspA DvMF_0565 0.45 -1.0

Or see this region's nucleotide sequence