Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0532 and DvMF_0533 are separated by 72 nucleotides DvMF_0533 and DvMF_0534 are separated by 6 nucleotides DvMF_0534 and DvMF_0535 are separated by 9 nucleotides DvMF_0535 and DvMF_0536 overlap by 8 nucleotides
DvMF_0532: DvMF_0532 - UbiA prenyltransferase (RefSeq), at 628,030 to 629,070
_0532
DvMF_0533: DvMF_0533 - cytochrome c oxidase, subunit II (RefSeq), at 629,143 to 630,360
_0533
DvMF_0534: DvMF_0534 - caa(3)-type oxidase, subunit IV (RefSeq), at 630,367 to 630,657
_0534
DvMF_0535: DvMF_0535 - cytochrome c oxidase subunit III (RefSeq), at 630,667 to 631,263
_0535
DvMF_0536: DvMF_0536 - cytochrome c oxidase, subunit I (RefSeq), at 631,256 to 632,881
_0536
Position (kb) 629
630
631 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 628.164 kb on + strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532 at 628.431 kb on + strand, within DvMF_0532 at 628.566 kb on - strand, within DvMF_0532 at 628.567 kb on + strand, within DvMF_0532 at 628.749 kb on - strand, within DvMF_0532 at 628.913 kb on + strand, within DvMF_0532 at 628.913 kb on + strand, within DvMF_0532 at 629.186 kb on + strand at 629.209 kb on - strand at 629.222 kb on + strand at 629.648 kb on + strand, within DvMF_0533 at 630.123 kb on + strand, within DvMF_0533 at 630.444 kb on + strand, within DvMF_0534 at 630.590 kb on - strand, within DvMF_0534 at 630.596 kb on + strand, within DvMF_0534 at 630.730 kb on - strand, within DvMF_0535 at 630.815 kb on - strand, within DvMF_0535 at 630.828 kb on + strand, within DvMF_0535 at 631.174 kb on - strand, within DvMF_0535 at 631.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 628,164 + DvMF_0532 0.13 -1.3 628,396 - DvMF_0532 0.35 -3.9 628,396 - DvMF_0532 0.35 -0.6 628,431 + DvMF_0532 0.39 -0.9 628,566 - DvMF_0532 0.51 -0.5 628,567 + DvMF_0532 0.52 -0.9 628,749 - DvMF_0532 0.69 -0.4 628,913 + DvMF_0532 0.85 -0.7 628,913 + DvMF_0532 0.85 -1.8 629,186 + -2.6 629,209 - +0.1 629,222 + -1.0 629,648 + DvMF_0533 0.41 -1.7 630,123 + DvMF_0533 0.80 -0.9 630,444 + DvMF_0534 0.26 -1.0 630,590 - DvMF_0534 0.77 -0.3 630,596 + DvMF_0534 0.79 -0.5 630,730 - DvMF_0535 0.11 -0.7 630,815 - DvMF_0535 0.25 -0.4 630,828 + DvMF_0535 0.27 -1.1 631,174 - DvMF_0535 0.85 -0.4 631,353 - -0.6
Or see this region's nucleotide sequence