Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0530 and DvMF_0531 are separated by 159 nucleotides DvMF_0531 and DvMF_0532 are separated by 48 nucleotides DvMF_0532 and DvMF_0533 are separated by 72 nucleotides
DvMF_0530: DvMF_0530 - transcriptional regulator, AraC family (RefSeq), at 626,521 to 627,399
_0530
DvMF_0531: DvMF_0531 - hypothetical protein (RefSeq), at 627,559 to 627,981
_0531
DvMF_0532: DvMF_0532 - UbiA prenyltransferase (RefSeq), at 628,030 to 629,070
_0532
DvMF_0533: DvMF_0533 - cytochrome c oxidase, subunit II (RefSeq), at 629,143 to 630,360
_0533
Position (kb) 628
629
630 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 627.140 kb on - strand, within DvMF_0530 at 627.971 kb on + strand at 628.131 kb on - strand at 628.164 kb on + strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532 at 628.431 kb on + strand, within DvMF_0532 at 628.566 kb on - strand, within DvMF_0532 at 628.567 kb on + strand, within DvMF_0532 at 628.749 kb on - strand, within DvMF_0532 at 628.913 kb on + strand, within DvMF_0532 at 628.913 kb on + strand, within DvMF_0532 at 629.186 kb on + strand at 629.209 kb on - strand at 629.222 kb on + strand at 629.648 kb on + strand, within DvMF_0533
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 627,140 - DvMF_0530 0.70 -1.4 627,971 + -1.7 628,131 - -0.1 628,164 + DvMF_0532 0.13 -1.3 628,396 - DvMF_0532 0.35 -3.9 628,396 - DvMF_0532 0.35 -0.6 628,431 + DvMF_0532 0.39 -0.9 628,566 - DvMF_0532 0.51 -0.5 628,567 + DvMF_0532 0.52 -0.9 628,749 - DvMF_0532 0.69 -0.4 628,913 + DvMF_0532 0.85 -0.7 628,913 + DvMF_0532 0.85 -1.8 629,186 + -2.6 629,209 - +0.1 629,222 + -1.0 629,648 + DvMF_0533 0.41 -1.7
Or see this region's nucleotide sequence