Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0529 and DvMF_0530 are separated by 319 nucleotides DvMF_0530 and DvMF_0531 are separated by 159 nucleotides DvMF_0531 and DvMF_0532 are separated by 48 nucleotides
DvMF_0529: DvMF_0529 - aldo/keto reductase (RefSeq), at 624,999 to 626,201
_0529
DvMF_0530: DvMF_0530 - transcriptional regulator, AraC family (RefSeq), at 626,521 to 627,399
_0530
DvMF_0531: DvMF_0531 - hypothetical protein (RefSeq), at 627,559 to 627,981
_0531
DvMF_0532: DvMF_0532 - UbiA prenyltransferase (RefSeq), at 628,030 to 629,070
_0532
Position (kb) 626
627
628 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 625.566 kb on + strand, within DvMF_0529 at 625.610 kb on + strand, within DvMF_0529 at 625.618 kb on + strand, within DvMF_0529 at 625.618 kb on - strand, within DvMF_0529 at 625.618 kb on - strand, within DvMF_0529 at 625.685 kb on + strand, within DvMF_0529 at 625.782 kb on + strand, within DvMF_0529 at 625.783 kb on + strand, within DvMF_0529 at 625.819 kb on - strand, within DvMF_0529 at 626.196 kb on - strand at 626.201 kb on - strand at 626.328 kb on + strand at 626.714 kb on + strand, within DvMF_0530 at 626.890 kb on - strand, within DvMF_0530 at 626.956 kb on + strand, within DvMF_0530 at 627.140 kb on - strand, within DvMF_0530 at 627.971 kb on + strand at 628.131 kb on - strand at 628.164 kb on + strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 625,566 + DvMF_0529 0.47 +0.4 625,610 + DvMF_0529 0.51 -0.4 625,618 + DvMF_0529 0.51 -1.0 625,618 - DvMF_0529 0.51 -0.6 625,618 - DvMF_0529 0.51 -0.4 625,685 + DvMF_0529 0.57 +0.7 625,782 + DvMF_0529 0.65 -1.1 625,783 + DvMF_0529 0.65 -0.2 625,819 - DvMF_0529 0.68 -0.6 626,196 - -0.8 626,201 - -0.4 626,328 + +0.0 626,714 + DvMF_0530 0.22 -1.2 626,890 - DvMF_0530 0.42 -0.9 626,956 + DvMF_0530 0.49 -0.6 627,140 - DvMF_0530 0.70 -1.4 627,971 + -1.7 628,131 - -0.1 628,164 + DvMF_0532 0.13 -1.3 628,396 - DvMF_0532 0.35 -3.9 628,396 - DvMF_0532 0.35 -0.6
Or see this region's nucleotide sequence