Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0509 and DvMF_0510 are separated by 162 nucleotides DvMF_0510 and DvMF_0511 are separated by 146 nucleotides DvMF_0511 and DvMF_0512 are separated by 358 nucleotides
DvMF_0509: DvMF_0509 - diguanylate cyclase (RefSeq), at 599,259 to 600,755
_0509
DvMF_0510: DvMF_0510 - C_GCAxxG_C_C family protein (RefSeq), at 600,918 to 601,412
_0510
DvMF_0511: DvMF_0511 - transcriptional regulator, LysR family (RefSeq), at 601,559 to 603,658
_0511
DvMF_0512: DvMF_0512 - conserved integral membrane protein (RefSeq), at 604,017 to 604,727
_0512
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 600.594 kb on + strand, within DvMF_0509 at 600.641 kb on - strand at 600.848 kb on + strand at 600.866 kb on - strand at 600.893 kb on + strand at 600.911 kb on + strand at 600.924 kb on - strand at 601.227 kb on + strand, within DvMF_0510 at 601.267 kb on - strand, within DvMF_0510 at 601.574 kb on + strand at 601.582 kb on - strand at 601.794 kb on + strand, within DvMF_0511 at 602.034 kb on + strand, within DvMF_0511 at 602.121 kb on + strand, within DvMF_0511 at 602.135 kb on - strand, within DvMF_0511 at 602.135 kb on - strand, within DvMF_0511 at 602.139 kb on - strand, within DvMF_0511 at 602.146 kb on + strand, within DvMF_0511 at 602.154 kb on - strand, within DvMF_0511 at 602.180 kb on - strand, within DvMF_0511 at 602.329 kb on + strand, within DvMF_0511 at 602.329 kb on + strand, within DvMF_0511 at 602.432 kb on + strand, within DvMF_0511 at 602.458 kb on + strand, within DvMF_0511 at 602.500 kb on - strand, within DvMF_0511 at 602.594 kb on + strand, within DvMF_0511 at 602.796 kb on - strand, within DvMF_0511 at 602.953 kb on - strand, within DvMF_0511 at 603.006 kb on - strand, within DvMF_0511 at 603.207 kb on - strand, within DvMF_0511 at 603.207 kb on - strand, within DvMF_0511 at 603.238 kb on + strand, within DvMF_0511 at 603.257 kb on + strand, within DvMF_0511 at 603.265 kb on - strand, within DvMF_0511 at 603.330 kb on + strand, within DvMF_0511 at 603.330 kb on + strand, within DvMF_0511 at 603.337 kb on - strand, within DvMF_0511 at 603.388 kb on - strand, within DvMF_0511 at 603.422 kb on - strand, within DvMF_0511 at 603.438 kb on + strand, within DvMF_0511 at 604.071 kb on - strand at 604.123 kb on + strand, within DvMF_0512 at 604.333 kb on - strand, within DvMF_0512 at 604.356 kb on - strand, within DvMF_0512 at 604.467 kb on - strand, within DvMF_0512 at 604.486 kb on + strand, within DvMF_0512 at 604.513 kb on - strand, within DvMF_0512 at 604.567 kb on + strand, within DvMF_0512 at 604.614 kb on - strand, within DvMF_0512
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 600,594 + DvMF_0509 0.89 -0.6 600,641 - -0.7 600,848 + -2.2 600,866 - -0.7 600,893 + -1.7 600,911 + -0.5 600,924 - -1.1 601,227 + DvMF_0510 0.62 -0.6 601,267 - DvMF_0510 0.71 -0.5 601,574 + -0.7 601,582 - -0.6 601,794 + DvMF_0511 0.11 -0.9 602,034 + DvMF_0511 0.23 -0.2 602,121 + DvMF_0511 0.27 -0.5 602,135 - DvMF_0511 0.27 -1.4 602,135 - DvMF_0511 0.27 -0.1 602,139 - DvMF_0511 0.28 -1.6 602,146 + DvMF_0511 0.28 -0.1 602,154 - DvMF_0511 0.28 -1.6 602,180 - DvMF_0511 0.30 -1.8 602,329 + DvMF_0511 0.37 -0.3 602,329 + DvMF_0511 0.37 -0.9 602,432 + DvMF_0511 0.42 -0.4 602,458 + DvMF_0511 0.43 +0.4 602,500 - DvMF_0511 0.45 -0.3 602,594 + DvMF_0511 0.49 -0.5 602,796 - DvMF_0511 0.59 -4.0 602,953 - DvMF_0511 0.66 -0.4 603,006 - DvMF_0511 0.69 -1.7 603,207 - DvMF_0511 0.78 +0.0 603,207 - DvMF_0511 0.78 -1.0 603,238 + DvMF_0511 0.80 -0.1 603,257 + DvMF_0511 0.81 -0.3 603,265 - DvMF_0511 0.81 -4.1 603,330 + DvMF_0511 0.84 -0.7 603,330 + DvMF_0511 0.84 -1.2 603,337 - DvMF_0511 0.85 -1.2 603,388 - DvMF_0511 0.87 +0.6 603,422 - DvMF_0511 0.89 -1.7 603,438 + DvMF_0511 0.89 -1.2 604,071 - -1.1 604,123 + DvMF_0512 0.15 -2.8 604,333 - DvMF_0512 0.44 -1.3 604,356 - DvMF_0512 0.48 -1.2 604,467 - DvMF_0512 0.63 -0.7 604,486 + DvMF_0512 0.66 -0.3 604,513 - DvMF_0512 0.70 +0.1 604,567 + DvMF_0512 0.77 -1.5 604,614 - DvMF_0512 0.84 -0.5
Or see this region's nucleotide sequence