Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0440

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0439 and DvMF_0440 overlap by 4 nucleotidesDvMF_0440 and DvMF_0441 are separated by 222 nucleotides DvMF_0439: DvMF_0439 - phosphoglyceromutase (RefSeq), at 514,727 to 516,400 _0439 DvMF_0440: DvMF_0440 - iojap-like protein (RefSeq), at 516,397 to 516,984 _0440 DvMF_0441: DvMF_0441 - nitroreductase (RefSeq), at 517,207 to 517,860 _0441 Position (kb) 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 516.590 kb on + strand, within DvMF_0440at 516.800 kb on + strand, within DvMF_0440at 516.877 kb on + strand, within DvMF_0440at 516.885 kb on - strand, within DvMF_0440at 516.997 kb on + strandat 516.998 kb on - strandat 517.019 kb on + strandat 517.027 kb on - strandat 517.204 kb on + strandat 517.212 kb on - strandat 517.384 kb on + strand, within DvMF_0441at 517.684 kb on - strand, within DvMF_0441at 517.684 kb on - strand, within DvMF_0441at 517.864 kb on - strandat 517.940 kb on - strandat 517.967 kb on + strandat 517.967 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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516,590 + DvMF_0440 0.33 -3.4
516,800 + DvMF_0440 0.69 -0.3
516,877 + DvMF_0440 0.82 -0.4
516,885 - DvMF_0440 0.83 +1.4
516,997 + +0.9
516,998 - +0.2
517,019 + -0.1
517,027 - +0.3
517,204 + +0.8
517,212 - -0.1
517,384 + DvMF_0441 0.27 -0.4
517,684 - DvMF_0441 0.73 +0.0
517,684 - DvMF_0441 0.73 -0.4
517,864 - -1.0
517,940 - +3.1
517,967 + -0.6
517,967 + -0.4

Or see this region's nucleotide sequence