Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0399

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0398 and DvMF_0399 are separated by 160 nucleotidesDvMF_0399 and DvMF_0400 are separated by 392 nucleotides DvMF_0398: DvMF_0398 - short-chain dehydrogenase/reductase SDR (RefSeq), at 469,064 to 469,867 _0398 DvMF_0399: DvMF_0399 - multiple antibiotic resistance (MarC)-related protein (RefSeq), at 470,028 to 470,630 _0399 DvMF_0400: DvMF_0400 - putative lipoprotein (RefSeq), at 471,023 to 471,763 _0400 Position (kb) 470 471Strain fitness (log2 ratio) -1 0 1at 469.567 kb on - strand, within DvMF_0398at 469.780 kb on + strand, within DvMF_0398at 469.788 kb on - strandat 469.933 kb on + strandat 469.936 kb on - strandat 469.954 kb on - strandat 470.116 kb on - strand, within DvMF_0399at 470.678 kb on + strandat 471.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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469,567 - DvMF_0398 0.63 -0.4
469,780 + DvMF_0398 0.89 -0.4
469,788 - -0.5
469,933 + -0.5
469,936 - -1.1
469,954 - -0.7
470,116 - DvMF_0399 0.15 -0.9
470,678 + -0.5
471,014 - -0.3

Or see this region's nucleotide sequence