Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0255

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0254 and DvMF_0255 overlap by 14 nucleotidesDvMF_0255 and DvMF_0256 are separated by 93 nucleotides DvMF_0254: DvMF_0254 - response regulator receiver modulated serine phosphatase (RefSeq), at 289,325 to 290,917 _0254 DvMF_0255: DvMF_0255 - D-tyrosyl-tRNA(Tyr) deacylase (RefSeq), at 290,904 to 291,458 _0255 DvMF_0256: DvMF_0256 - AMP-dependent synthetase and ligase (RefSeq), at 291,552 to 293,303 _0256 Position (kb) 290 291 292Strain fitness (log2 ratio) -2 -1 0 1at 289.947 kb on - strand, within DvMF_0254at 290.095 kb on - strand, within DvMF_0254at 290.215 kb on - strand, within DvMF_0254at 290.403 kb on - strand, within DvMF_0254at 290.736 kb on + strand, within DvMF_0254at 290.980 kb on - strand, within DvMF_0255at 291.663 kb on - strandat 291.670 kb on + strandat 291.670 kb on + strandat 291.678 kb on - strandat 291.678 kb on - strandat 291.844 kb on + strand, within DvMF_0256at 291.850 kb on + strand, within DvMF_0256at 291.850 kb on + strand, within DvMF_0256at 292.186 kb on + strand, within DvMF_0256at 292.246 kb on + strand, within DvMF_0256

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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289,947 - DvMF_0254 0.39 -0.3
290,095 - DvMF_0254 0.48 -0.4
290,215 - DvMF_0254 0.56 -1.6
290,403 - DvMF_0254 0.68 -0.5
290,736 + DvMF_0254 0.89 -1.1
290,980 - DvMF_0255 0.14 -0.2
291,663 - -0.3
291,670 + +0.6
291,670 + -1.6
291,678 - -0.1
291,678 - +1.3
291,844 + DvMF_0256 0.17 +1.1
291,850 + DvMF_0256 0.17 -2.1
291,850 + DvMF_0256 0.17 +0.2
292,186 + DvMF_0256 0.36 +0.0
292,246 + DvMF_0256 0.40 -1.1

Or see this region's nucleotide sequence