Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0034 and DvMF_0035 are separated by 38 nucleotides DvMF_0035 and DvMF_0036 are separated by 30 nucleotides
DvMF_0034: DvMF_0034 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 43,413 to 45,029
_0034
DvMF_0035: DvMF_0035 - efflux transporter, RND family, MFP subunit (RefSeq), at 45,068 to 46,282
_0035
DvMF_0036: DvMF_0036 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 46,313 to 49,459
_0036
Position (kb)
45
46
47 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 44.188 kb on + strand, within DvMF_0034 at 44.226 kb on + strand, within DvMF_0034 at 44.298 kb on + strand, within DvMF_0034 at 44.684 kb on + strand, within DvMF_0034 at 44.689 kb on + strand, within DvMF_0034 at 44.692 kb on - strand, within DvMF_0034 at 44.782 kb on - strand, within DvMF_0034 at 44.829 kb on + strand, within DvMF_0034 at 44.986 kb on + strand at 45.146 kb on - strand at 45.369 kb on + strand, within DvMF_0035 at 45.389 kb on + strand, within DvMF_0035 at 45.495 kb on - strand, within DvMF_0035 at 45.756 kb on - strand, within DvMF_0035 at 45.807 kb on + strand, within DvMF_0035 at 45.807 kb on + strand, within DvMF_0035 at 45.807 kb on + strand, within DvMF_0035 at 45.815 kb on - strand, within DvMF_0035 at 45.979 kb on - strand, within DvMF_0035 at 46.063 kb on + strand, within DvMF_0035 at 46.103 kb on + strand, within DvMF_0035 at 46.164 kb on - strand at 46.171 kb on - strand at 46.221 kb on + strand at 46.519 kb on + strand at 46.583 kb on - strand at 46.634 kb on + strand, within DvMF_0036 at 47.148 kb on + strand, within DvMF_0036 at 47.156 kb on - strand, within DvMF_0036
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 44,188 + DvMF_0034 0.48 -1.1 44,226 + DvMF_0034 0.50 -1.1 44,298 + DvMF_0034 0.55 -0.0 44,684 + DvMF_0034 0.79 -1.2 44,689 + DvMF_0034 0.79 -1.0 44,692 - DvMF_0034 0.79 +0.3 44,782 - DvMF_0034 0.85 -1.1 44,829 + DvMF_0034 0.88 -0.1 44,986 + +0.3 45,146 - -0.5 45,369 + DvMF_0035 0.25 -0.7 45,389 + DvMF_0035 0.26 -0.0 45,495 - DvMF_0035 0.35 -0.8 45,756 - DvMF_0035 0.57 -2.8 45,807 + DvMF_0035 0.61 -2.1 45,807 + DvMF_0035 0.61 -1.9 45,807 + DvMF_0035 0.61 -1.1 45,815 - DvMF_0035 0.61 -0.7 45,979 - DvMF_0035 0.75 -0.5 46,063 + DvMF_0035 0.82 -0.5 46,103 + DvMF_0035 0.85 -1.2 46,164 - -0.4 46,171 - -0.3 46,221 + -0.4 46,519 + -0.6 46,583 - +0.2 46,634 + DvMF_0036 0.10 -2.1 47,148 + DvMF_0036 0.27 -0.3 47,156 - DvMF_0036 0.27 -1.1
Or see this region's nucleotide sequence