Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0035

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0034 and DvMF_0035 are separated by 38 nucleotidesDvMF_0035 and DvMF_0036 are separated by 30 nucleotides DvMF_0034: DvMF_0034 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 43,413 to 45,029 _0034 DvMF_0035: DvMF_0035 - efflux transporter, RND family, MFP subunit (RefSeq), at 45,068 to 46,282 _0035 DvMF_0036: DvMF_0036 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 46,313 to 49,459 _0036 Position (kb) 45 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1at 44.188 kb on + strand, within DvMF_0034at 44.226 kb on + strand, within DvMF_0034at 44.298 kb on + strand, within DvMF_0034at 44.684 kb on + strand, within DvMF_0034at 44.689 kb on + strand, within DvMF_0034at 44.692 kb on - strand, within DvMF_0034at 44.782 kb on - strand, within DvMF_0034at 44.829 kb on + strand, within DvMF_0034at 44.986 kb on + strandat 45.146 kb on - strandat 45.369 kb on + strand, within DvMF_0035at 45.389 kb on + strand, within DvMF_0035at 45.495 kb on - strand, within DvMF_0035at 45.756 kb on - strand, within DvMF_0035at 45.807 kb on + strand, within DvMF_0035at 45.807 kb on + strand, within DvMF_0035at 45.807 kb on + strand, within DvMF_0035at 45.815 kb on - strand, within DvMF_0035at 45.979 kb on - strand, within DvMF_0035at 46.063 kb on + strand, within DvMF_0035at 46.103 kb on + strand, within DvMF_0035at 46.164 kb on - strandat 46.171 kb on - strandat 46.221 kb on + strandat 46.519 kb on + strandat 46.583 kb on - strandat 46.634 kb on + strand, within DvMF_0036at 47.148 kb on + strand, within DvMF_0036at 47.156 kb on - strand, within DvMF_0036

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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44,188 + DvMF_0034 0.48 -1.1
44,226 + DvMF_0034 0.50 -1.1
44,298 + DvMF_0034 0.55 -0.0
44,684 + DvMF_0034 0.79 -1.2
44,689 + DvMF_0034 0.79 -1.0
44,692 - DvMF_0034 0.79 +0.3
44,782 - DvMF_0034 0.85 -1.1
44,829 + DvMF_0034 0.88 -0.1
44,986 + +0.3
45,146 - -0.5
45,369 + DvMF_0035 0.25 -0.7
45,389 + DvMF_0035 0.26 -0.0
45,495 - DvMF_0035 0.35 -0.8
45,756 - DvMF_0035 0.57 -2.8
45,807 + DvMF_0035 0.61 -2.1
45,807 + DvMF_0035 0.61 -1.9
45,807 + DvMF_0035 0.61 -1.1
45,815 - DvMF_0035 0.61 -0.7
45,979 - DvMF_0035 0.75 -0.5
46,063 + DvMF_0035 0.82 -0.5
46,103 + DvMF_0035 0.85 -1.2
46,164 - -0.4
46,171 - -0.3
46,221 + -0.4
46,519 + -0.6
46,583 - +0.2
46,634 + DvMF_0036 0.10 -2.1
47,148 + DvMF_0036 0.27 -0.3
47,156 - DvMF_0036 0.27 -1.1

Or see this region's nucleotide sequence