Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0020

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0019 and DvMF_0020 are separated by 136 nucleotidesDvMF_0020 and DvMF_0021 are separated by 278 nucleotides DvMF_0019: DvMF_0019 - hypothetical protein (RefSeq), at 24,087 to 25,421 _0019 DvMF_0020: DvMF_0020 - hypothetical protein (RefSeq), at 25,558 to 26,634 _0020 DvMF_0021: DvMF_0021 - stationary-phase survival protein SurE (RefSeq), at 26,913 to 27,722 _0021 Position (kb) 25 26 27Strain fitness (log2 ratio) -2 -1 0 1 2at 24.764 kb on + strand, within DvMF_0019at 24.894 kb on + strand, within DvMF_0019at 24.979 kb on + strand, within DvMF_0019at 24.980 kb on - strand, within DvMF_0019at 25.033 kb on - strand, within DvMF_0019at 25.049 kb on + strand, within DvMF_0019at 25.101 kb on + strand, within DvMF_0019at 25.119 kb on + strand, within DvMF_0019at 25.127 kb on - strand, within DvMF_0019at 25.313 kb on + strandat 25.363 kb on - strandat 25.575 kb on + strandat 25.700 kb on - strand, within DvMF_0020at 25.917 kb on - strand, within DvMF_0020at 26.796 kb on + strandat 26.868 kb on - strandat 26.988 kb on - strandat 27.032 kb on + strand, within DvMF_0021at 27.239 kb on - strand, within DvMF_0021at 27.366 kb on - strand, within DvMF_0021at 27.522 kb on - strand, within DvMF_0021

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
remove
24,764 + DvMF_0019 0.51 -0.8
24,894 + DvMF_0019 0.60 -0.1
24,979 + DvMF_0019 0.67 -0.8
24,980 - DvMF_0019 0.67 +0.4
25,033 - DvMF_0019 0.71 -1.0
25,049 + DvMF_0019 0.72 -0.0
25,101 + DvMF_0019 0.76 -0.8
25,119 + DvMF_0019 0.77 -0.3
25,127 - DvMF_0019 0.78 -0.5
25,313 + -2.3
25,363 - +0.0
25,575 + -0.6
25,700 - DvMF_0020 0.13 +0.0
25,917 - DvMF_0020 0.33 -0.5
26,796 + +0.0
26,868 - +0.1
26,988 - -2.1
27,032 + DvMF_0021 0.15 -0.7
27,239 - DvMF_0021 0.40 +1.9
27,366 - DvMF_0021 0.56 -0.6
27,522 - DvMF_0021 0.75 -1.4

Or see this region's nucleotide sequence