Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3902 and Shewana3_3903 are separated by 60 nucleotides Shewana3_3903 and Shewana3_3904 are separated by 12 nucleotides Shewana3_3904 and argC are separated by 31 nucleotides
Shewana3_3902: Shewana3_3902 - argininosuccinate synthase (RefSeq), at 4,682,547 to 4,683,770
_3902
Shewana3_3903: Shewana3_3903 - ornithine carbamoyltransferase (RefSeq), at 4,683,831 to 4,684,736
_3903
Shewana3_3904: Shewana3_3904 - acetylglutamate kinase (RefSeq), at 4,684,749 to 4,685,531
_3904
Shewana3_3905: argC - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 4,685,563 to 4,686,543
argC
Position (kb) 4684
4685
4686 Strain fitness (log2 ratio) -1
0
1 at 4683.846 kb on + strand at 4683.969 kb on - strand, within Shewana3_3903 at 4684.124 kb on + strand, within Shewana3_3903 at 4684.180 kb on - strand, within Shewana3_3903 at 4684.209 kb on - strand, within Shewana3_3903 at 4684.427 kb on - strand, within Shewana3_3903 at 4684.624 kb on - strand, within Shewana3_3903 at 4684.631 kb on + strand, within Shewana3_3903 at 4684.802 kb on + strand at 4684.846 kb on - strand, within Shewana3_3904 at 4685.758 kb on + strand, within argC at 4685.822 kb on - strand, within argC at 4685.874 kb on + strand, within argC at 4685.925 kb on - strand, within argC at 4686.022 kb on + strand, within argC at 4686.100 kb on - strand, within argC at 4686.132 kb on + strand, within argC at 4686.363 kb on - strand, within argC at 4686.385 kb on + strand, within argC at 4686.397 kb on + strand, within argC at 4686.442 kb on + strand, within argC
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,683,846 + -0.7 4,683,969 - Shewana3_3903 0.15 -0.4 4,684,124 + Shewana3_3903 0.32 -0.3 4,684,180 - Shewana3_3903 0.39 -0.4 4,684,209 - Shewana3_3903 0.42 -0.5 4,684,427 - Shewana3_3903 0.66 -0.5 4,684,624 - Shewana3_3903 0.88 -0.6 4,684,631 + Shewana3_3903 0.88 -0.6 4,684,802 + -0.0 4,684,846 - Shewana3_3904 0.12 -1.2 4,685,758 + argC Shewana3_3905 0.20 -1.1 4,685,822 - argC Shewana3_3905 0.26 -1.2 4,685,874 + argC Shewana3_3905 0.32 +0.2 4,685,925 - argC Shewana3_3905 0.37 -0.4 4,686,022 + argC Shewana3_3905 0.47 -1.5 4,686,100 - argC Shewana3_3905 0.55 -0.6 4,686,132 + argC Shewana3_3905 0.58 -0.6 4,686,363 - argC Shewana3_3905 0.82 -0.8 4,686,385 + argC Shewana3_3905 0.84 +0.0 4,686,397 + argC Shewana3_3905 0.85 -0.8 4,686,442 + argC Shewana3_3905 0.90 -0.7
Or see this region's nucleotide sequence