Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2060

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2057 and Shewana3_2058 overlap by 1 nucleotidesShewana3_2058 and Shewana3_2059 are separated by 14 nucleotidesShewana3_2059 and Shewana3_2060 are separated by 56 nucleotidesShewana3_2060 and Shewana3_2061 are separated by 259 nucleotides Shewana3_2057: Shewana3_2057 - DsrH family protein (RefSeq), at 2,464,914 to 2,465,195 _2057 Shewana3_2058: Shewana3_2058 - DsrE family protein (RefSeq), at 2,465,195 to 2,465,551 _2058 Shewana3_2059: Shewana3_2059 - DsrE family protein (RefSeq), at 2,465,566 to 2,465,958 _2059 Shewana3_2060: Shewana3_2060 - hypothetical protein (RefSeq), at 2,466,015 to 2,466,674 _2060 Shewana3_2061: Shewana3_2061 - putative DNA-binding transcriptional regulator (RefSeq), at 2,466,934 to 2,467,845 _2061 Position (kb) 2466 2467Strain fitness (log2 ratio) -1 0 1 2at 2466.070 kb on - strandat 2466.802 kb on - strandat 2466.890 kb on - strandat 2466.915 kb on - strandat 2467.140 kb on + strand, within Shewana3_2061at 2467.411 kb on + strand, within Shewana3_2061at 2467.555 kb on - strand, within Shewana3_2061at 2467.668 kb on - strand, within Shewana3_2061at 2467.668 kb on - strand, within Shewana3_2061

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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2,466,070 - +0.4
2,466,802 - -1.0
2,466,890 - +0.8
2,466,915 - +0.3
2,467,140 + Shewana3_2061 0.23 -0.4
2,467,411 + Shewana3_2061 0.52 +0.4
2,467,555 - Shewana3_2061 0.68 +0.6
2,467,668 - Shewana3_2061 0.80 +2.3
2,467,668 - Shewana3_2061 0.80 +0.5

Or see this region's nucleotide sequence