Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0856 and Shewana3_0857 overlap by 8 nucleotides Shewana3_0857 and Shewana3_0858 are separated by 676 nucleotides
Shewana3_0856: Shewana3_0856 - sulfite reductase subunit beta (RefSeq), at 995,254 to 996,951
_0856
Shewana3_0857: Shewana3_0857 - phosphoadenosine phosphosulfate reductase (RefSeq), at 996,944 to 997,741
_0857
Shewana3_0858: Shewana3_0858 - monofunctional biosynthetic peptidoglycan transglycosylase (RefSeq), at 998,418 to 999,203
_0858
Position (kb) 996
997
998 Strain fitness (log2 ratio) -2
-1
0
1 at 996.024 kb on + strand, within Shewana3_0856 at 996.146 kb on - strand, within Shewana3_0856 at 996.189 kb on + strand, within Shewana3_0856 at 996.210 kb on - strand, within Shewana3_0856 at 996.237 kb on + strand, within Shewana3_0856 at 996.287 kb on - strand, within Shewana3_0856 at 996.287 kb on - strand, within Shewana3_0856 at 996.340 kb on + strand, within Shewana3_0856 at 996.500 kb on + strand, within Shewana3_0856 at 996.500 kb on + strand, within Shewana3_0856 at 996.513 kb on - strand, within Shewana3_0856 at 996.538 kb on + strand, within Shewana3_0856 at 996.651 kb on - strand, within Shewana3_0856 at 996.745 kb on - strand, within Shewana3_0856 at 997.303 kb on + strand, within Shewana3_0857 at 997.303 kb on + strand, within Shewana3_0857 at 997.571 kb on + strand, within Shewana3_0857 at 998.035 kb on + strand at 998.035 kb on + strand at 998.176 kb on + strand at 998.219 kb on - strand at 998.239 kb on - strand at 998.259 kb on - strand at 998.334 kb on + strand at 998.690 kb on + strand, within Shewana3_0858
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 996,024 + Shewana3_0856 0.45 -0.5 996,146 - Shewana3_0856 0.53 -0.7 996,189 + Shewana3_0856 0.55 -1.4 996,210 - Shewana3_0856 0.56 -1.5 996,237 + Shewana3_0856 0.58 -0.7 996,287 - Shewana3_0856 0.61 -2.2 996,287 - Shewana3_0856 0.61 -1.2 996,340 + Shewana3_0856 0.64 -0.9 996,500 + Shewana3_0856 0.73 -0.8 996,500 + Shewana3_0856 0.73 -1.0 996,513 - Shewana3_0856 0.74 -0.9 996,538 + Shewana3_0856 0.76 -0.7 996,651 - Shewana3_0856 0.82 -0.6 996,745 - Shewana3_0856 0.88 -2.1 997,303 + Shewana3_0857 0.45 -1.7 997,303 + Shewana3_0857 0.45 -2.4 997,571 + Shewana3_0857 0.79 -1.0 998,035 + -0.2 998,035 + +0.2 998,176 + -0.4 998,219 - +1.1 998,239 - -1.3 998,259 - -0.2 998,334 + +0.0 998,690 + Shewana3_0858 0.35 +0.3
Or see this region's nucleotide sequence