Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0820

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0819 and Shewana3_0820 are separated by 258 nucleotidesShewana3_0820 and Shewana3_0821 are separated by 195 nucleotides Shewana3_0819: Shewana3_0819 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 947,610 to 950,804 _0819 Shewana3_0820: Shewana3_0820 - SH3 type 3 domain-containing protein (RefSeq), at 951,063 to 951,611 _0820 Shewana3_0821: Shewana3_0821 - phosphate transporter (RefSeq), at 951,807 to 953,096 _0821 Position (kb) 951 952Strain fitness (log2 ratio) -1 0 1at 950.085 kb on + strand, within Shewana3_0819at 950.094 kb on - strand, within Shewana3_0819at 950.570 kb on + strandat 950.787 kb on - strandat 951.485 kb on - strand, within Shewana3_0820at 951.526 kb on - strand, within Shewana3_0820at 951.558 kb on + strandat 951.558 kb on + strandat 951.718 kb on - strandat 951.795 kb on + strandat 951.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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950,085 + Shewana3_0819 0.77 -1.3
950,094 - Shewana3_0819 0.78 +0.6
950,570 + +0.2
950,787 - -0.1
951,485 - Shewana3_0820 0.77 -1.5
951,526 - Shewana3_0820 0.84 -0.0
951,558 + +0.9
951,558 + +0.3
951,718 - +0.1
951,795 + +0.0
951,804 - -0.7

Or see this region's nucleotide sequence