Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0723 and Shewana3_0724 are separated by 44 nucleotides Shewana3_0724 and tolC are separated by 72 nucleotides tolC and Shewana3_0726 are separated by 243 nucleotides Shewana3_0726 and Shewana3_0727 overlap by 8 nucleotides
Shewana3_0723: Shewana3_0723 - hypothetical protein (RefSeq), at 839,748 to 840,716
_0723
Shewana3_0724: Shewana3_0724 - hypothetical protein (RefSeq), at 840,761 to 841,456
_0724
Shewana3_0725: tolC - outer membrane channel protein (RefSeq), at 841,529 to 842,836
tolC
Shewana3_0726: Shewana3_0726 - nucleoside diphosphate pyrophosphatase (RefSeq), at 843,080 to 843,691
_0726
Shewana3_0727: Shewana3_0727 - hypothetical protein (RefSeq), at 843,684 to 844,136
_0727
Position (kb) 841
842
843 Strain fitness (log2 ratio) -2
-1
0
1 at 840.549 kb on - strand, within Shewana3_0723 at 840.593 kb on - strand, within Shewana3_0723 at 840.615 kb on + strand, within Shewana3_0723 at 840.675 kb on + strand at 840.746 kb on + strand at 840.746 kb on + strand at 840.754 kb on - strand at 840.890 kb on + strand, within Shewana3_0724 at 840.995 kb on + strand, within Shewana3_0724 at 841.054 kb on - strand, within Shewana3_0724 at 841.072 kb on + strand, within Shewana3_0724 at 841.092 kb on + strand, within Shewana3_0724 at 841.121 kb on + strand, within Shewana3_0724 at 841.220 kb on + strand, within Shewana3_0724 at 841.220 kb on + strand, within Shewana3_0724 at 841.313 kb on + strand, within Shewana3_0724 at 841.671 kb on - strand, within tolC at 841.671 kb on - strand, within tolC at 841.770 kb on - strand, within tolC at 841.839 kb on - strand, within tolC at 841.894 kb on + strand, within tolC at 842.002 kb on - strand, within tolC at 842.252 kb on - strand, within tolC at 842.494 kb on - strand, within tolC at 842.494 kb on - strand, within tolC at 842.530 kb on - strand, within tolC at 842.530 kb on - strand, within tolC at 842.530 kb on - strand, within tolC at 842.656 kb on - strand, within tolC at 842.740 kb on - strand at 842.960 kb on - strand at 842.984 kb on + strand at 843.003 kb on + strand at 843.248 kb on + strand, within Shewana3_0726 at 843.401 kb on + strand, within Shewana3_0726 at 843.462 kb on + strand, within Shewana3_0726 at 843.470 kb on - strand, within Shewana3_0726 at 843.484 kb on + strand, within Shewana3_0726 at 843.501 kb on - strand, within Shewana3_0726 at 843.510 kb on + strand, within Shewana3_0726 at 843.572 kb on + strand, within Shewana3_0726 at 843.580 kb on - strand, within Shewana3_0726 at 843.761 kb on + strand, within Shewana3_0727 at 843.791 kb on - strand, within Shewana3_0727 at 843.805 kb on + strand, within Shewana3_0727 at 843.821 kb on + strand, within Shewana3_0727 at 843.830 kb on + strand, within Shewana3_0727
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 840,549 - Shewana3_0723 0.83 -0.7 840,593 - Shewana3_0723 0.87 +1.0 840,615 + Shewana3_0723 0.89 +0.0 840,675 + -0.2 840,746 + +0.1 840,746 + +0.2 840,754 - +1.0 840,890 + Shewana3_0724 0.19 -1.6 840,995 + Shewana3_0724 0.34 +0.0 841,054 - Shewana3_0724 0.42 +0.4 841,072 + Shewana3_0724 0.45 +0.6 841,092 + Shewana3_0724 0.48 -0.3 841,121 + Shewana3_0724 0.52 -0.5 841,220 + Shewana3_0724 0.66 +0.4 841,220 + Shewana3_0724 0.66 +0.5 841,313 + Shewana3_0724 0.79 +0.7 841,671 - tolC Shewana3_0725 0.11 -1.1 841,671 - tolC Shewana3_0725 0.11 +0.1 841,770 - tolC Shewana3_0725 0.18 -2.4 841,839 - tolC Shewana3_0725 0.24 -1.5 841,894 + tolC Shewana3_0725 0.28 -0.6 842,002 - tolC Shewana3_0725 0.36 -1.1 842,252 - tolC Shewana3_0725 0.55 -1.9 842,494 - tolC Shewana3_0725 0.74 +1.3 842,494 - tolC Shewana3_0725 0.74 -1.0 842,530 - tolC Shewana3_0725 0.77 -0.3 842,530 - tolC Shewana3_0725 0.77 -1.8 842,530 - tolC Shewana3_0725 0.77 -1.7 842,656 - tolC Shewana3_0725 0.86 +0.4 842,740 - -2.5 842,960 - -0.3 842,984 + -1.2 843,003 + +0.3 843,248 + Shewana3_0726 0.27 +0.0 843,401 + Shewana3_0726 0.52 +0.7 843,462 + Shewana3_0726 0.62 -0.3 843,470 - Shewana3_0726 0.64 -0.2 843,484 + Shewana3_0726 0.66 +0.8 843,501 - Shewana3_0726 0.69 -0.0 843,510 + Shewana3_0726 0.70 -1.0 843,572 + Shewana3_0726 0.80 +0.1 843,580 - Shewana3_0726 0.82 -0.5 843,761 + Shewana3_0727 0.17 -0.5 843,791 - Shewana3_0727 0.24 -2.0 843,805 + Shewana3_0727 0.27 +0.5 843,821 + Shewana3_0727 0.30 +0.2 843,830 + Shewana3_0727 0.32 +0.5
Or see this region's nucleotide sequence