Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0640 and Shewana3_0641 overlap by 13 nucleotides Shewana3_0641 and Shewana3_0642 are separated by 390 nucleotides
Shewana3_0640: Shewana3_0640 - predicted chromosome partitioning protein (with smc-like Shewana3_0638) <small>(from data)</small>, at 756,338 to 757,558
_0640
Shewana3_0641: Shewana3_0641 - hypothetical protein (RefSeq), at 757,546 to 758,418
_0641
Shewana3_0642: Shewana3_0642 - sodium:dicarboxylate symporter (RefSeq), at 758,809 to 760,059
_0642
Position (kb) 757
758
759 Strain fitness (log2 ratio) -2
-1
0
1
2 at 756.553 kb on + strand, within Shewana3_0640 at 756.558 kb on + strand, within Shewana3_0640 at 756.634 kb on + strand, within Shewana3_0640 at 756.662 kb on - strand, within Shewana3_0640 at 756.727 kb on + strand, within Shewana3_0640 at 756.747 kb on + strand, within Shewana3_0640 at 756.905 kb on - strand, within Shewana3_0640 at 757.034 kb on + strand, within Shewana3_0640 at 757.133 kb on + strand, within Shewana3_0640 at 757.228 kb on + strand, within Shewana3_0640 at 757.255 kb on + strand, within Shewana3_0640 at 757.257 kb on + strand, within Shewana3_0640 at 757.462 kb on + strand at 757.470 kb on - strand at 757.476 kb on - strand at 757.604 kb on + strand at 757.610 kb on + strand at 757.610 kb on + strand at 757.766 kb on + strand, within Shewana3_0641 at 758.183 kb on - strand, within Shewana3_0641 at 758.189 kb on + strand, within Shewana3_0641 at 758.244 kb on + strand, within Shewana3_0641 at 758.252 kb on - strand, within Shewana3_0641 at 758.724 kb on - strand at 759.085 kb on - strand, within Shewana3_0642 at 759.140 kb on - strand, within Shewana3_0642 at 759.194 kb on + strand, within Shewana3_0642 at 759.228 kb on - strand, within Shewana3_0642 at 759.334 kb on + strand, within Shewana3_0642 at 759.383 kb on - strand, within Shewana3_0642
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 756,553 + Shewana3_0640 0.18 -2.6 756,558 + Shewana3_0640 0.18 +0.3 756,634 + Shewana3_0640 0.24 +1.0 756,662 - Shewana3_0640 0.27 +0.3 756,727 + Shewana3_0640 0.32 -0.1 756,747 + Shewana3_0640 0.33 -0.9 756,905 - Shewana3_0640 0.46 -1.8 757,034 + Shewana3_0640 0.57 +0.4 757,133 + Shewana3_0640 0.65 -0.4 757,228 + Shewana3_0640 0.73 +0.6 757,255 + Shewana3_0640 0.75 -1.6 757,257 + Shewana3_0640 0.75 -0.8 757,462 + +0.5 757,470 - +2.0 757,476 - -0.4 757,604 + -0.9 757,610 + +1.0 757,610 + +0.8 757,766 + Shewana3_0641 0.25 -2.2 758,183 - Shewana3_0641 0.73 -0.7 758,189 + Shewana3_0641 0.74 -1.2 758,244 + Shewana3_0641 0.80 -0.5 758,252 - Shewana3_0641 0.81 +0.1 758,724 - -1.6 759,085 - Shewana3_0642 0.22 +0.1 759,140 - Shewana3_0642 0.26 +0.0 759,194 + Shewana3_0642 0.31 +0.0 759,228 - Shewana3_0642 0.33 +1.2 759,334 + Shewana3_0642 0.42 -0.3 759,383 - Shewana3_0642 0.46 +0.0
Or see this region's nucleotide sequence