Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0626 and Shewana3_0627 are separated by 90 nucleotides Shewana3_0627 and Shewana3_0628 are separated by 550 nucleotides
Shewana3_0626: Shewana3_0626 - hypothetical protein (RefSeq), at 735,102 to 736,592
_0626
Shewana3_0627: Shewana3_0627 - hypothetical protein (RefSeq), at 736,683 to 737,444
_0627
Shewana3_0628: Shewana3_0628 - hypothetical protein (RefSeq), at 737,995 to 738,405
_0628
Position (kb) 736
737
738 Strain fitness (log2 ratio) -2
-1
0
1 at 735.686 kb on - strand, within Shewana3_0626 at 735.688 kb on + strand, within Shewana3_0626 at 735.688 kb on + strand, within Shewana3_0626 at 735.693 kb on + strand, within Shewana3_0626 at 735.696 kb on - strand, within Shewana3_0626 at 735.920 kb on + strand, within Shewana3_0626 at 735.928 kb on - strand, within Shewana3_0626 at 735.928 kb on - strand, within Shewana3_0626 at 735.984 kb on - strand, within Shewana3_0626 at 736.021 kb on - strand, within Shewana3_0626 at 736.177 kb on + strand, within Shewana3_0626 at 736.242 kb on + strand, within Shewana3_0626 at 736.250 kb on - strand, within Shewana3_0626 at 736.288 kb on - strand, within Shewana3_0626 at 736.348 kb on - strand, within Shewana3_0626 at 736.484 kb on + strand at 736.493 kb on + strand at 736.651 kb on - strand at 736.733 kb on - strand at 736.733 kb on - strand at 737.012 kb on - strand, within Shewana3_0627 at 737.028 kb on + strand, within Shewana3_0627 at 737.028 kb on + strand, within Shewana3_0627 at 737.111 kb on + strand, within Shewana3_0627 at 737.187 kb on - strand, within Shewana3_0627 at 737.252 kb on + strand, within Shewana3_0627 at 737.292 kb on - strand, within Shewana3_0627 at 737.300 kb on - strand, within Shewana3_0627 at 737.378 kb on + strand at 737.548 kb on + strand at 737.684 kb on - strand at 737.740 kb on - strand at 737.802 kb on + strand at 737.833 kb on + strand at 737.833 kb on + strand at 737.833 kb on + strand at 737.841 kb on - strand at 737.841 kb on - strand at 738.059 kb on + strand, within Shewana3_0628 at 738.249 kb on - strand, within Shewana3_0628 at 738.285 kb on + strand, within Shewana3_0628 at 738.327 kb on - strand, within Shewana3_0628
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 735,686 - Shewana3_0626 0.39 +0.1 735,688 + Shewana3_0626 0.39 -0.2 735,688 + Shewana3_0626 0.39 -0.9 735,693 + Shewana3_0626 0.40 -2.7 735,696 - Shewana3_0626 0.40 +0.6 735,920 + Shewana3_0626 0.55 -0.1 735,928 - Shewana3_0626 0.55 +1.5 735,928 - Shewana3_0626 0.55 -0.9 735,984 - Shewana3_0626 0.59 -0.3 736,021 - Shewana3_0626 0.62 +0.2 736,177 + Shewana3_0626 0.72 +0.5 736,242 + Shewana3_0626 0.76 -0.4 736,250 - Shewana3_0626 0.77 +0.0 736,288 - Shewana3_0626 0.80 -0.4 736,348 - Shewana3_0626 0.84 -0.1 736,484 + +0.4 736,493 + -0.8 736,651 - -2.4 736,733 - +0.3 736,733 - -0.3 737,012 - Shewana3_0627 0.43 -0.1 737,028 + Shewana3_0627 0.45 -0.1 737,028 + Shewana3_0627 0.45 +0.4 737,111 + Shewana3_0627 0.56 +0.8 737,187 - Shewana3_0627 0.66 +0.0 737,252 + Shewana3_0627 0.75 +0.6 737,292 - Shewana3_0627 0.80 +0.3 737,300 - Shewana3_0627 0.81 +1.0 737,378 + +0.1 737,548 + -0.1 737,684 - +0.4 737,740 - +0.2 737,802 + +0.2 737,833 + -0.6 737,833 + -0.1 737,833 + -0.6 737,841 - +0.5 737,841 - -0.2 738,059 + Shewana3_0628 0.16 +0.3 738,249 - Shewana3_0628 0.62 -0.7 738,285 + Shewana3_0628 0.71 +0.3 738,327 - Shewana3_0628 0.81 -0.3
Or see this region's nucleotide sequence