Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0514 and Shewana3_0515 are separated by 164 nucleotides Shewana3_0515 and Shewana3_0516 are separated by 208 nucleotides Shewana3_0516 and Shewana3_0517 are separated by 15 nucleotides
Shewana3_0514: Shewana3_0514 - hypothetical protein (RefSeq), at 603,725 to 603,928
_0514
Shewana3_0515: Shewana3_0515 - hypothetical protein (RefSeq), at 604,093 to 604,542
_0515
Shewana3_0516: Shewana3_0516 - outer membrane efflux family protein, putative (RefSeq), at 604,751 to 606,121
_0516
Shewana3_0517: Shewana3_0517 - RND family efflux transporter MFP subunit (RefSeq), at 606,137 to 607,417
_0517
Position (kb) 604
605
606
607 Strain fitness (log2 ratio) -1
0
1 at 603.785 kb on + strand, within Shewana3_0514 at 603.803 kb on + strand, within Shewana3_0514 at 603.867 kb on - strand, within Shewana3_0514 at 604.053 kb on - strand at 604.273 kb on + strand, within Shewana3_0515 at 604.573 kb on - strand at 604.619 kb on + strand at 604.629 kb on + strand at 604.637 kb on - strand at 604.647 kb on + strand at 604.655 kb on - strand at 604.705 kb on + strand at 604.784 kb on + strand at 605.020 kb on - strand, within Shewana3_0516 at 605.097 kb on + strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.115 kb on + strand, within Shewana3_0516 at 605.159 kb on - strand, within Shewana3_0516 at 605.224 kb on + strand, within Shewana3_0516 at 605.234 kb on - strand, within Shewana3_0516 at 605.276 kb on - strand, within Shewana3_0516 at 605.295 kb on + strand, within Shewana3_0516 at 605.303 kb on + strand, within Shewana3_0516 at 605.305 kb on + strand, within Shewana3_0516 at 605.311 kb on - strand, within Shewana3_0516 at 605.326 kb on - strand, within Shewana3_0516 at 605.593 kb on + strand, within Shewana3_0516 at 605.601 kb on - strand, within Shewana3_0516 at 605.628 kb on + strand, within Shewana3_0516 at 605.630 kb on - strand, within Shewana3_0516 at 605.669 kb on - strand, within Shewana3_0516 at 605.669 kb on - strand, within Shewana3_0516 at 605.712 kb on - strand, within Shewana3_0516 at 606.035 kb on - strand at 606.135 kb on - strand at 606.194 kb on + strand at 606.233 kb on + strand at 606.249 kb on + strand at 606.249 kb on + strand at 606.303 kb on - strand, within Shewana3_0517 at 606.442 kb on - strand, within Shewana3_0517 at 606.490 kb on + strand, within Shewana3_0517 at 606.661 kb on + strand, within Shewana3_0517 at 606.727 kb on - strand, within Shewana3_0517 at 606.884 kb on + strand, within Shewana3_0517 at 606.913 kb on + strand, within Shewana3_0517 at 607.031 kb on + strand, within Shewana3_0517 at 607.075 kb on + strand, within Shewana3_0517 at 607.101 kb on - strand, within Shewana3_0517
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 603,785 + Shewana3_0514 0.29 +0.2 603,803 + Shewana3_0514 0.38 +0.0 603,867 - Shewana3_0514 0.70 -0.5 604,053 - +0.4 604,273 + Shewana3_0515 0.40 +0.1 604,573 - +0.5 604,619 + -0.2 604,629 + +0.4 604,637 - +0.2 604,647 + +0.6 604,655 - -0.5 604,705 + +0.1 604,784 + +0.3 605,020 - Shewana3_0516 0.20 -1.0 605,097 + Shewana3_0516 0.25 +0.0 605,105 - Shewana3_0516 0.26 +0.3 605,105 - Shewana3_0516 0.26 +0.5 605,105 - Shewana3_0516 0.26 -0.4 605,105 - Shewana3_0516 0.26 +0.1 605,115 + Shewana3_0516 0.27 -1.0 605,159 - Shewana3_0516 0.30 -0.7 605,224 + Shewana3_0516 0.35 -0.3 605,234 - Shewana3_0516 0.35 -0.7 605,276 - Shewana3_0516 0.38 +0.3 605,295 + Shewana3_0516 0.40 -0.6 605,303 + Shewana3_0516 0.40 +0.1 605,305 + Shewana3_0516 0.40 +0.4 605,311 - Shewana3_0516 0.41 -1.0 605,326 - Shewana3_0516 0.42 -0.3 605,593 + Shewana3_0516 0.61 +0.0 605,601 - Shewana3_0516 0.62 -0.7 605,628 + Shewana3_0516 0.64 -0.4 605,630 - Shewana3_0516 0.64 +0.5 605,669 - Shewana3_0516 0.67 -0.3 605,669 - Shewana3_0516 0.67 +0.2 605,712 - Shewana3_0516 0.70 +0.0 606,035 - +0.0 606,135 - -0.1 606,194 + +0.5 606,233 + -0.5 606,249 + +0.2 606,249 + -0.1 606,303 - Shewana3_0517 0.13 +0.4 606,442 - Shewana3_0517 0.24 +0.3 606,490 + Shewana3_0517 0.28 +0.0 606,661 + Shewana3_0517 0.41 +0.3 606,727 - Shewana3_0517 0.46 -0.6 606,884 + Shewana3_0517 0.58 +0.8 606,913 + Shewana3_0517 0.61 +0.2 607,031 + Shewana3_0517 0.70 -0.5 607,075 + Shewana3_0517 0.73 -0.5 607,101 - Shewana3_0517 0.75 +0.4
Or see this region's nucleotide sequence