Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0395 and Shewana3_0396 are separated by 4 nucleotides Shewana3_0396 and Shewana3_0397 are separated by 98 nucleotides Shewana3_0397 and fis are separated by 254 nucleotides fis and Shewana3_0399 are separated by 16 nucleotides
Shewana3_0395: Shewana3_0395 - HupE/UreJ protein (RefSeq), at 455,318 to 455,896
_0395
Shewana3_0396: Shewana3_0396 - putative transcriptional regulator (RefSeq), at 455,901 to 456,404
_0396
Shewana3_0397: Shewana3_0397 - hemerythrin HHE cation binding domain-containing protein (RefSeq), at 456,503 to 457,249
_0397
Shewana3_0398: fis - DNA-binding protein Fis (RefSeq), at 457,504 to 457,809
fis
Shewana3_0399: Shewana3_0399 - nifR3 family TIM-barrel protein (RefSeq), at 457,826 to 458,794
_0399
Position (kb) 456
457
458 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 455.603 kb on + strand, within Shewana3_0395 at 455.730 kb on + strand, within Shewana3_0395 at 455.738 kb on + strand, within Shewana3_0395 at 455.740 kb on - strand, within Shewana3_0395 at 455.899 kb on + strand at 455.906 kb on - strand at 456.045 kb on - strand, within Shewana3_0396 at 456.203 kb on + strand, within Shewana3_0396 at 456.276 kb on + strand, within Shewana3_0396 at 456.276 kb on + strand, within Shewana3_0396 at 456.276 kb on + strand, within Shewana3_0396 at 456.283 kb on - strand, within Shewana3_0396 at 456.284 kb on - strand, within Shewana3_0396 at 456.334 kb on + strand, within Shewana3_0396 at 456.346 kb on + strand, within Shewana3_0396 at 456.586 kb on + strand, within Shewana3_0397 at 456.742 kb on - strand, within Shewana3_0397 at 457.058 kb on - strand, within Shewana3_0397 at 457.111 kb on - strand, within Shewana3_0397 at 457.177 kb on + strand at 457.193 kb on + strand at 457.235 kb on - strand at 457.395 kb on - strand at 457.547 kb on - strand, within fis at 458.191 kb on - strand, within Shewana3_0399
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 455,603 + Shewana3_0395 0.49 -0.4 455,730 + Shewana3_0395 0.71 +1.0 455,738 + Shewana3_0395 0.73 +0.2 455,740 - Shewana3_0395 0.73 -3.0 455,899 + +0.8 455,906 - -0.5 456,045 - Shewana3_0396 0.29 -0.1 456,203 + Shewana3_0396 0.60 -0.3 456,276 + Shewana3_0396 0.74 -0.0 456,276 + Shewana3_0396 0.74 +0.5 456,276 + Shewana3_0396 0.74 -0.4 456,283 - Shewana3_0396 0.76 -0.7 456,284 - Shewana3_0396 0.76 -0.3 456,334 + Shewana3_0396 0.86 +0.4 456,346 + Shewana3_0396 0.88 -1.1 456,586 + Shewana3_0397 0.11 -1.0 456,742 - Shewana3_0397 0.32 -0.6 457,058 - Shewana3_0397 0.74 -0.4 457,111 - Shewana3_0397 0.81 -1.0 457,177 + +0.2 457,193 + +0.1 457,235 - -0.0 457,395 - +0.2 457,547 - fis Shewana3_0398 0.14 -0.5 458,191 - Shewana3_0399 0.38 -0.5
Or see this region's nucleotide sequence