Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0091 and Shewana3_0092 are separated by 242 nucleotides Shewana3_0092 and Shewana3_0093 are separated by 29 nucleotides Shewana3_0093 and Shewana3_0094 are separated by 43 nucleotides
Shewana3_0091: Shewana3_0091 - hypothetical protein (RefSeq), at 102,105 to 103,118
_0091
Shewana3_0092: Shewana3_0092 - integrase catalytic subunit (RefSeq), at 103,361 to 104,164
_0092
Shewana3_0093: Shewana3_0093 - transposase (RefSeq), at 104,194 to 104,589
_0093
Shewana3_0094: Shewana3_0094 - hypothetical protein (RefSeq), at 104,633 to 105,280
_0094
Position (kb) 103
104
105 Strain fitness (log2 ratio) -1
0
1 at 102.503 kb on + strand, within Shewana3_0091 at 102.510 kb on - strand, within Shewana3_0091 at 102.545 kb on + strand, within Shewana3_0091 at 102.545 kb on + strand, within Shewana3_0091 at 102.553 kb on + strand, within Shewana3_0091 at 102.642 kb on - strand, within Shewana3_0091 at 102.744 kb on + strand, within Shewana3_0091 at 102.752 kb on - strand, within Shewana3_0091 at 102.752 kb on - strand, within Shewana3_0091 at 102.791 kb on + strand, within Shewana3_0091 at 102.810 kb on - strand, within Shewana3_0091 at 102.811 kb on - strand, within Shewana3_0091 at 102.829 kb on + strand, within Shewana3_0091 at 102.837 kb on + strand, within Shewana3_0091 at 102.903 kb on + strand, within Shewana3_0091 at 102.911 kb on - strand, within Shewana3_0091 at 103.056 kb on + strand at 103.149 kb on - strand at 103.176 kb on - strand at 103.176 kb on - strand at 103.189 kb on + strand at 103.212 kb on + strand at 103.270 kb on + strand at 103.328 kb on + strand at 103.851 kb on - strand, within Shewana3_0092 at 104.385 kb on - strand, within Shewana3_0093 at 104.783 kb on - strand, within Shewana3_0094 at 104.792 kb on + strand, within Shewana3_0094 at 104.843 kb on + strand, within Shewana3_0094 at 105.130 kb on - strand, within Shewana3_0094
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 102,503 + Shewana3_0091 0.39 -0.7 102,510 - Shewana3_0091 0.40 -0.5 102,545 + Shewana3_0091 0.43 -0.6 102,545 + Shewana3_0091 0.43 +0.2 102,553 + Shewana3_0091 0.44 +0.3 102,642 - Shewana3_0091 0.53 +0.4 102,744 + Shewana3_0091 0.63 -0.6 102,752 - Shewana3_0091 0.64 +0.4 102,752 - Shewana3_0091 0.64 +0.2 102,791 + Shewana3_0091 0.68 +0.8 102,810 - Shewana3_0091 0.70 +0.0 102,811 - Shewana3_0091 0.70 -1.0 102,829 + Shewana3_0091 0.71 -0.3 102,837 + Shewana3_0091 0.72 +0.3 102,903 + Shewana3_0091 0.79 +0.2 102,911 - Shewana3_0091 0.79 +0.6 103,056 + -0.7 103,149 - +0.5 103,176 - -1.0 103,176 - -0.0 103,189 + -0.1 103,212 + +0.4 103,270 + -0.2 103,328 + +0.1 103,851 - Shewana3_0092 0.61 -1.2 104,385 - Shewana3_0093 0.48 +1.0 104,783 - Shewana3_0094 0.23 +0.0 104,792 + Shewana3_0094 0.25 +0.6 104,843 + Shewana3_0094 0.32 -0.1 105,130 - Shewana3_0094 0.77 +0.1
Or see this region's nucleotide sequence