Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3593 and Shew_3594 are separated by 153 nucleotides Shew_3594 and Shew_3595 are separated by 91 nucleotides Shew_3595 and Shew_3596 are separated by 112 nucleotides Shew_3596 and Shew_3597 are separated by 156 nucleotides
Shew_3593: Shew_3593 - hypothetical protein (RefSeq), at 4,291,447 to 4,292,172
_3593
Shew_3594: Shew_3594 - hypothetical protein (RefSeq), at 4,292,326 to 4,292,844
_3594
Shew_3595: Shew_3595 - hypothetical protein (RefSeq), at 4,292,936 to 4,293,388
_3595
Shew_3596: Shew_3596 - methyltransferase type 11 (RefSeq), at 4,293,501 to 4,294,226
_3596
Shew_3597: Shew_3597 - inner membrane protein YjeH (RefSeq), at 4,294,383 to 4,295,642
_3597
Position (kb) 4292
4293
4294 Strain fitness (log2 ratio) -1
0
1 at 4292.489 kb on + strand, within Shew_3594 at 4292.607 kb on + strand, within Shew_3594 at 4292.860 kb on + strand at 4292.868 kb on - strand at 4292.914 kb on - strand at 4293.034 kb on + strand, within Shew_3595 at 4293.161 kb on + strand, within Shew_3595 at 4293.161 kb on + strand, within Shew_3595 at 4293.233 kb on - strand, within Shew_3595 at 4293.330 kb on + strand, within Shew_3595 at 4293.338 kb on - strand, within Shew_3595 at 4293.391 kb on - strand at 4293.462 kb on + strand at 4293.646 kb on - strand, within Shew_3596 at 4293.989 kb on + strand, within Shew_3596 at 4294.020 kb on + strand, within Shew_3596
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 4,292,489 + Shew_3594 0.31 -0.4 4,292,607 + Shew_3594 0.54 -0.4 4,292,860 + -0.1 4,292,868 - +1.1 4,292,914 - +0.7 4,293,034 + Shew_3595 0.22 -0.8 4,293,161 + Shew_3595 0.50 +0.9 4,293,161 + Shew_3595 0.50 +0.9 4,293,233 - Shew_3595 0.66 +0.6 4,293,330 + Shew_3595 0.87 +0.6 4,293,338 - Shew_3595 0.89 +0.4 4,293,391 - -0.4 4,293,462 + +0.5 4,293,646 - Shew_3596 0.20 +0.3 4,293,989 + Shew_3596 0.67 +0.1 4,294,020 + Shew_3596 0.71 +1.2
Or see this region's nucleotide sequence