Strain Fitness in Shewanella loihica PV-4 around Shew_3439

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3438 and Shew_3439 are separated by 36 nucleotidesShew_3439 and Shew_3440 are separated by 38 nucleotidesShew_3440 and Shew_3441 are separated by 20 nucleotides Shew_3438: Shew_3438 - type IV-A pilus assembly ATPase PilB (RefSeq), at 4,105,375 to 4,107,084 _3438 Shew_3439: Shew_3439 - type II secretion system protein (RefSeq), at 4,107,121 to 4,108,389 _3439 Shew_3440: Shew_3440 - prepilin peptidase (RefSeq), at 4,108,428 to 4,109,339 _3440 Shew_3441: Shew_3441 - dephospho-CoA kinase (RefSeq), at 4,109,360 to 4,109,965 _3441 Position (kb) 4107 4108 4109Strain fitness (log2 ratio) -1 0 1 2 3 4at 4106.148 kb on - strand, within Shew_3438at 4106.167 kb on - strand, within Shew_3438at 4106.175 kb on + strand, within Shew_3438at 4106.255 kb on + strand, within Shew_3438at 4106.258 kb on - strand, within Shew_3438at 4106.258 kb on - strand, within Shew_3438at 4106.263 kb on - strand, within Shew_3438at 4106.273 kb on - strand, within Shew_3438at 4106.273 kb on - strand, within Shew_3438at 4106.278 kb on - strand, within Shew_3438at 4106.301 kb on + strand, within Shew_3438at 4106.332 kb on + strand, within Shew_3438at 4106.338 kb on + strand, within Shew_3438at 4106.340 kb on - strand, within Shew_3438at 4106.340 kb on - strand, within Shew_3438at 4106.357 kb on + strand, within Shew_3438at 4106.365 kb on - strand, within Shew_3438at 4106.385 kb on + strand, within Shew_3438at 4106.393 kb on - strand, within Shew_3438at 4106.419 kb on - strand, within Shew_3438at 4106.506 kb on + strand, within Shew_3438at 4106.507 kb on + strand, within Shew_3438at 4106.514 kb on - strand, within Shew_3438at 4106.514 kb on - strand, within Shew_3438at 4106.751 kb on + strand, within Shew_3438at 4106.759 kb on - strand, within Shew_3438at 4106.868 kb on + strand, within Shew_3438at 4106.868 kb on + strand, within Shew_3438at 4106.874 kb on - strand, within Shew_3438at 4106.876 kb on - strand, within Shew_3438at 4106.876 kb on - strand, within Shew_3438at 4106.876 kb on - strand, within Shew_3438at 4106.942 kb on + strandat 4106.952 kb on - strandat 4107.078 kb on + strandat 4107.086 kb on - strandat 4107.098 kb on - strandat 4107.116 kb on + strandat 4107.194 kb on + strandat 4107.194 kb on + strandat 4107.251 kb on - strand, within Shew_3439at 4107.252 kb on + strand, within Shew_3439at 4107.252 kb on + strand, within Shew_3439at 4107.299 kb on + strand, within Shew_3439at 4107.300 kb on + strand, within Shew_3439at 4107.308 kb on - strand, within Shew_3439at 4107.420 kb on - strand, within Shew_3439at 4107.428 kb on + strand, within Shew_3439at 4107.428 kb on + strand, within Shew_3439at 4107.436 kb on - strand, within Shew_3439at 4107.436 kb on - strand, within Shew_3439at 4107.436 kb on + strand, within Shew_3439at 4107.436 kb on - strand, within Shew_3439at 4107.436 kb on - strand, within Shew_3439at 4107.490 kb on - strand, within Shew_3439at 4107.499 kb on + strand, within Shew_3439at 4107.509 kb on + strand, within Shew_3439at 4107.509 kb on + strand, within Shew_3439at 4107.509 kb on + strand, within Shew_3439at 4107.509 kb on + strand, within Shew_3439at 4107.517 kb on - strand, within Shew_3439at 4107.517 kb on - strand, within Shew_3439at 4107.517 kb on - strand, within Shew_3439at 4107.517 kb on - strand, within Shew_3439at 4107.527 kb on + strand, within Shew_3439at 4107.527 kb on - strand, within Shew_3439at 4107.573 kb on + strand, within Shew_3439at 4107.573 kb on + strand, within Shew_3439at 4107.581 kb on - strand, within Shew_3439at 4107.581 kb on - strand, within Shew_3439at 4107.586 kb on - strand, within Shew_3439at 4107.588 kb on + strand, within Shew_3439at 4107.591 kb on - strand, within Shew_3439at 4107.596 kb on - strand, within Shew_3439at 4107.596 kb on - strand, within Shew_3439at 4107.596 kb on - strand, within Shew_3439at 4107.605 kb on + strand, within Shew_3439at 4107.676 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.678 kb on + strand, within Shew_3439at 4107.686 kb on - strand, within Shew_3439at 4107.686 kb on - strand, within Shew_3439at 4107.686 kb on - strand, within Shew_3439at 4107.686 kb on - strand, within Shew_3439at 4107.812 kb on + strand, within Shew_3439at 4107.825 kb on + strand, within Shew_3439at 4107.825 kb on + strand, within Shew_3439at 4107.833 kb on - strand, within Shew_3439at 4107.856 kb on + strand, within Shew_3439at 4107.969 kb on - strand, within Shew_3439at 4107.986 kb on + strand, within Shew_3439at 4108.041 kb on + strand, within Shew_3439at 4108.116 kb on - strand, within Shew_3439at 4108.148 kb on + strand, within Shew_3439at 4108.148 kb on + strand, within Shew_3439at 4108.169 kb on + strand, within Shew_3439at 4108.190 kb on - strand, within Shew_3439at 4108.267 kb on + strandat 4108.299 kb on + strandat 4108.323 kb on + strandat 4108.368 kb on + strandat 4108.452 kb on + strandat 4108.452 kb on + strandat 4108.542 kb on - strand, within Shew_3440at 4108.705 kb on - strand, within Shew_3440at 4108.899 kb on - strand, within Shew_3440at 4109.097 kb on + strand, within Shew_3440

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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4,106,148 - Shew_3438 0.45 +0.8
4,106,167 - Shew_3438 0.46 +1.5
4,106,175 + Shew_3438 0.47 +0.5
4,106,255 + Shew_3438 0.51 +1.1
4,106,258 - Shew_3438 0.52 +1.1
4,106,258 - Shew_3438 0.52 +2.0
4,106,263 - Shew_3438 0.52 +0.6
4,106,273 - Shew_3438 0.53 +0.7
4,106,273 - Shew_3438 0.53 +0.4
4,106,278 - Shew_3438 0.53 +1.4
4,106,301 + Shew_3438 0.54 -0.2
4,106,332 + Shew_3438 0.56 +0.2
4,106,338 + Shew_3438 0.56 +0.4
4,106,340 - Shew_3438 0.56 +2.2
4,106,340 - Shew_3438 0.56 -0.7
4,106,357 + Shew_3438 0.57 +1.1
4,106,365 - Shew_3438 0.58 +0.8
4,106,385 + Shew_3438 0.59 -0.8
4,106,393 - Shew_3438 0.60 +0.5
4,106,419 - Shew_3438 0.61 -0.8
4,106,506 + Shew_3438 0.66 -1.0
4,106,507 + Shew_3438 0.66 +0.6
4,106,514 - Shew_3438 0.67 +0.4
4,106,514 - Shew_3438 0.67 +0.2
4,106,751 + Shew_3438 0.80 +0.4
4,106,759 - Shew_3438 0.81 +2.0
4,106,868 + Shew_3438 0.87 +0.6
4,106,868 + Shew_3438 0.87 +0.0
4,106,874 - Shew_3438 0.88 +1.1
4,106,876 - Shew_3438 0.88 +0.8
4,106,876 - Shew_3438 0.88 +0.9
4,106,876 - Shew_3438 0.88 -0.6
4,106,942 + -0.6
4,106,952 - +1.6
4,107,078 + -0.9
4,107,086 - +1.6
4,107,098 - +0.7
4,107,116 + -0.4
4,107,194 + -0.0
4,107,194 + +0.5
4,107,251 - Shew_3439 0.10 +3.0
4,107,252 + Shew_3439 0.10 -0.9
4,107,252 + Shew_3439 0.10 -0.0
4,107,299 + Shew_3439 0.14 +0.4
4,107,300 + Shew_3439 0.14 +0.1
4,107,308 - Shew_3439 0.15 +1.5
4,107,420 - Shew_3439 0.24 +1.2
4,107,428 + Shew_3439 0.24 +0.7
4,107,428 + Shew_3439 0.24 -0.0
4,107,436 - Shew_3439 0.25 +1.2
4,107,436 - Shew_3439 0.25 +1.3
4,107,436 + Shew_3439 0.25 +0.4
4,107,436 - Shew_3439 0.25 +1.0
4,107,436 - Shew_3439 0.25 +1.7
4,107,490 - Shew_3439 0.29 +1.0
4,107,499 + Shew_3439 0.30 -1.5
4,107,509 + Shew_3439 0.31 +0.5
4,107,509 + Shew_3439 0.31 +0.1
4,107,509 + Shew_3439 0.31 -0.2
4,107,509 + Shew_3439 0.31 +1.0
4,107,517 - Shew_3439 0.31 -1.0
4,107,517 - Shew_3439 0.31 +0.7
4,107,517 - Shew_3439 0.31 +1.7
4,107,517 - Shew_3439 0.31 -0.1
4,107,527 + Shew_3439 0.32 +0.5
4,107,527 - Shew_3439 0.32 +1.7
4,107,573 + Shew_3439 0.36 +2.6
4,107,573 + Shew_3439 0.36 +0.2
4,107,581 - Shew_3439 0.36 +2.6
4,107,581 - Shew_3439 0.36 +1.0
4,107,586 - Shew_3439 0.37 +1.2
4,107,588 + Shew_3439 0.37 +0.8
4,107,591 - Shew_3439 0.37 +1.6
4,107,596 - Shew_3439 0.37 +1.4
4,107,596 - Shew_3439 0.37 +1.0
4,107,596 - Shew_3439 0.37 +1.2
4,107,605 + Shew_3439 0.38 +0.8
4,107,676 + Shew_3439 0.44 -0.1
4,107,678 + Shew_3439 0.44 -0.3
4,107,678 + Shew_3439 0.44 +0.3
4,107,678 + Shew_3439 0.44 -0.4
4,107,678 + Shew_3439 0.44 +0.4
4,107,678 + Shew_3439 0.44 +0.1
4,107,678 + Shew_3439 0.44 +0.2
4,107,678 + Shew_3439 0.44 -0.8
4,107,678 + Shew_3439 0.44 +0.6
4,107,678 + Shew_3439 0.44 +0.4
4,107,678 + Shew_3439 0.44 -0.3
4,107,678 + Shew_3439 0.44 +1.3
4,107,678 + Shew_3439 0.44 -0.0
4,107,678 + Shew_3439 0.44 +0.1
4,107,678 + Shew_3439 0.44 +0.2
4,107,678 + Shew_3439 0.44 +0.2
4,107,678 + Shew_3439 0.44 -0.1
4,107,686 - Shew_3439 0.45 +0.5
4,107,686 - Shew_3439 0.45 +0.8
4,107,686 - Shew_3439 0.45 +1.0
4,107,686 - Shew_3439 0.45 +0.0
4,107,812 + Shew_3439 0.54 -0.2
4,107,825 + Shew_3439 0.55 -0.1
4,107,825 + Shew_3439 0.55 -1.0
4,107,833 - Shew_3439 0.56 +0.5
4,107,856 + Shew_3439 0.58 +0.2
4,107,969 - Shew_3439 0.67 +2.2
4,107,986 + Shew_3439 0.68 +0.1
4,108,041 + Shew_3439 0.72 +0.3
4,108,116 - Shew_3439 0.78 +3.4
4,108,148 + Shew_3439 0.81 -0.0
4,108,148 + Shew_3439 0.81 +0.1
4,108,169 + Shew_3439 0.83 -0.6
4,108,190 - Shew_3439 0.84 +2.0
4,108,267 + -0.1
4,108,299 + +0.5
4,108,323 + -0.1
4,108,368 + -1.2
4,108,452 + +2.6
4,108,452 + +2.5
4,108,542 - Shew_3440 0.12 +3.9
4,108,705 - Shew_3440 0.30 +4.0
4,108,899 - Shew_3440 0.52 +3.1
4,109,097 + Shew_3440 0.73 +0.6

Or see this region's nucleotide sequence