Strain Fitness in Shewanella loihica PV-4 around Shew_R0104

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_R0103 and Shew_R0104 are separated by 240 nucleotidesShew_R0104 and Shew_2945 are separated by 834 nucleotides Shew_R0103: Shew_R0103 - 23S ribosomal RNA (RefSeq), at 3,484,613 to 3,487,505 _R0103 Shew_R0104: Shew_R0104 - 16S ribosomal RNA (RefSeq), at 3,487,746 to 3,489,302 _R0104 Shew_2945: Shew_2945 - CDP-diacylglycerol--serineO-phosphatidyltransferase (RefSeq), at 3,490,137 to 3,490,973 _2945 Position (kb) 3487 3488 3489 3490Strain fitness (log2 ratio) -1 0 1at 3489.964 kb on - strandat 3490.116 kb on - strandat 3490.273 kb on + strand, within Shew_2945at 3490.273 kb on + strand, within Shew_2945at 3490.281 kb on - strand, within Shew_2945

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
3,489,964 - +0.5
3,490,116 - +0.0
3,490,273 + Shew_2945 0.16 +1.3
3,490,273 + Shew_2945 0.16 +1.2
3,490,281 - Shew_2945 0.17 -1.0

Or see this region's nucleotide sequence