Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0604 and Shew_0605 are separated by 263 nucleotides Shew_0605 and Shew_0606 are separated by 84 nucleotides Shew_0606 and Shew_0607 overlap by 4 nucleotides Shew_0607 and Shew_0608 are separated by 12 nucleotides
Shew_0604: Shew_0604 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 682,776 to 684,251
_0604
Shew_0605: Shew_0605 - hypothetical protein (RefSeq), at 684,515 to 684,850
_0605
Shew_0606: Shew_0606 - polysulphide reductase, NrfD (RefSeq), at 684,935 to 685,876
_0606
Shew_0607: Shew_0607 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 685,873 to 686,445
_0607
Shew_0608: Shew_0608 - molybdopterin oxidoreductase (RefSeq), at 686,458 to 688,740
_0608
Position (kb) 684
685
686 Strain fitness (log2 ratio) -1
0
1 at 684.162 kb on - strand at 684.955 kb on - strand at 685.228 kb on + strand, within Shew_0606 at 685.228 kb on + strand, within Shew_0606 at 685.236 kb on - strand, within Shew_0606 at 685.280 kb on + strand, within Shew_0606 at 685.379 kb on - strand, within Shew_0606 at 685.657 kb on + strand, within Shew_0606 at 685.675 kb on - strand, within Shew_0606 at 685.697 kb on + strand, within Shew_0606 at 685.782 kb on - strand at 685.914 kb on + strand at 685.922 kb on - strand at 685.922 kb on - strand at 685.937 kb on + strand, within Shew_0607 at 686.846 kb on - strand, within Shew_0608
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 684,162 - +0.6 684,955 - -0.2 685,228 + Shew_0606 0.31 +0.5 685,228 + Shew_0606 0.31 -0.1 685,236 - Shew_0606 0.32 +0.1 685,280 + Shew_0606 0.37 +0.4 685,379 - Shew_0606 0.47 +0.2 685,657 + Shew_0606 0.77 +0.6 685,675 - Shew_0606 0.79 +0.5 685,697 + Shew_0606 0.81 +0.3 685,782 - -0.1 685,914 + -0.0 685,922 - +0.6 685,922 - +0.4 685,937 + Shew_0607 0.11 +1.2 686,846 - Shew_0608 0.17 -0.5
Or see this region's nucleotide sequence