Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0598 and Shew_0599 are separated by 544 nucleotides Shew_0599 and Shew_0600 are separated by 65 nucleotides Shew_0600 and Shew_0601 are separated by 594 nucleotides
Shew_0598: Shew_0598 - ATP-dependent RNA helicase DbpA (RefSeq), at 676,581 to 677,987
_0598
Shew_0599: Shew_0599 - hypothetical protein (RefSeq), at 678,532 to 679,308
_0599
Shew_0600: Shew_0600 - hypothetical protein (RefSeq), at 679,374 to 679,688
_0600
Shew_0601: Shew_0601 - hypothetical protein (RefSeq), at 680,283 to 680,669
_0601
Position (kb) 678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 677.758 kb on - strand, within Shew_0598 at 677.847 kb on - strand at 677.895 kb on - strand at 677.942 kb on + strand at 677.948 kb on + strand at 677.954 kb on + strand at 677.956 kb on - strand at 677.956 kb on - strand at 677.956 kb on - strand at 677.956 kb on - strand at 678.027 kb on + strand at 678.107 kb on + strand at 678.188 kb on - strand at 678.206 kb on - strand at 678.276 kb on - strand at 678.282 kb on + strand at 678.282 kb on + strand at 678.316 kb on + strand at 678.316 kb on + strand at 678.371 kb on + strand at 678.379 kb on - strand at 678.379 kb on - strand at 678.486 kb on + strand at 678.487 kb on + strand at 678.487 kb on + strand at 678.521 kb on - strand at 678.524 kb on + strand at 678.532 kb on - strand at 678.532 kb on - strand at 678.604 kb on + strand at 678.606 kb on + strand at 678.624 kb on - strand, within Shew_0599 at 678.642 kb on - strand, within Shew_0599 at 678.649 kb on + strand, within Shew_0599 at 678.662 kb on + strand, within Shew_0599 at 678.706 kb on + strand, within Shew_0599 at 678.728 kb on + strand, within Shew_0599 at 678.728 kb on + strand, within Shew_0599 at 678.736 kb on - strand, within Shew_0599 at 678.760 kb on - strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.895 kb on - strand, within Shew_0599 at 678.897 kb on + strand, within Shew_0599 at 678.897 kb on + strand, within Shew_0599 at 678.897 kb on + strand, within Shew_0599 at 678.897 kb on + strand, within Shew_0599 at 678.903 kb on - strand, within Shew_0599 at 678.903 kb on - strand, within Shew_0599 at 678.905 kb on - strand, within Shew_0599 at 678.905 kb on - strand, within Shew_0599 at 678.906 kb on + strand, within Shew_0599 at 678.914 kb on - strand, within Shew_0599 at 678.915 kb on - strand, within Shew_0599 at 678.954 kb on + strand, within Shew_0599 at 678.968 kb on - strand, within Shew_0599 at 678.968 kb on - strand, within Shew_0599 at 678.975 kb on - strand, within Shew_0599 at 679.066 kb on + strand, within Shew_0599 at 679.072 kb on - strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.099 kb on - strand, within Shew_0599 at 679.099 kb on - strand, within Shew_0599 at 679.099 kb on - strand, within Shew_0599 at 679.099 kb on - strand, within Shew_0599 at 679.099 kb on - strand, within Shew_0599 at 679.100 kb on + strand, within Shew_0599 at 679.112 kb on + strand, within Shew_0599 at 679.124 kb on - strand, within Shew_0599 at 679.135 kb on - strand, within Shew_0599 at 679.135 kb on + strand, within Shew_0599 at 679.183 kb on + strand, within Shew_0599 at 679.183 kb on - strand, within Shew_0599 at 679.191 kb on + strand, within Shew_0599 at 679.199 kb on - strand, within Shew_0599 at 679.199 kb on - strand, within Shew_0599 at 679.213 kb on + strand, within Shew_0599 at 679.213 kb on + strand, within Shew_0599 at 679.280 kb on + strand at 679.305 kb on - strand at 679.305 kb on - strand at 679.326 kb on + strand at 679.326 kb on + strand at 679.326 kb on + strand at 679.334 kb on - strand at 679.334 kb on - strand at 679.334 kb on - strand at 679.345 kb on - strand at 679.356 kb on - strand at 679.397 kb on + strand at 679.404 kb on - strand at 679.419 kb on + strand, within Shew_0600 at 679.445 kb on - strand, within Shew_0600 at 679.447 kb on - strand, within Shew_0600 at 679.543 kb on - strand, within Shew_0600 at 679.551 kb on - strand, within Shew_0600 at 679.553 kb on + strand, within Shew_0600 at 679.553 kb on + strand, within Shew_0600 at 679.556 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.580 kb on + strand, within Shew_0600 at 679.580 kb on + strand, within Shew_0600 at 679.587 kb on + strand, within Shew_0600 at 679.587 kb on + strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.593 kb on - strand, within Shew_0600 at 679.597 kb on + strand, within Shew_0600 at 679.611 kb on + strand, within Shew_0600 at 679.657 kb on + strand at 679.702 kb on + strand at 679.702 kb on + strand at 679.710 kb on - strand at 679.710 kb on - strand at 679.710 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.737 kb on + strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.746 kb on + strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.758 kb on + strand at 679.758 kb on + strand at 679.758 kb on + strand at 679.763 kb on + strand at 679.766 kb on - strand at 679.766 kb on - strand at 679.803 kb on + strand at 679.803 kb on + strand at 679.811 kb on - strand at 679.811 kb on - strand at 679.811 kb on - strand at 679.855 kb on + strand at 679.907 kb on + strand at 679.907 kb on + strand at 679.915 kb on + strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on + strand at 679.915 kb on - strand at 679.923 kb on - strand at 679.923 kb on - strand at 679.930 kb on - strand at 679.968 kb on + strand at 679.983 kb on - strand at 680.003 kb on - strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.066 kb on + strand at 680.068 kb on - strand at 680.068 kb on - strand at 680.068 kb on - strand at 680.068 kb on - strand at 680.074 kb on + strand at 680.075 kb on - strand at 680.082 kb on - strand at 680.084 kb on + strand at 680.089 kb on - strand at 680.116 kb on + strand at 680.164 kb on + strand at 680.164 kb on + strand at 680.164 kb on + strand at 680.164 kb on + strand at 680.172 kb on - strand at 680.172 kb on - strand at 680.172 kb on + strand at 680.174 kb on + strand at 680.220 kb on + strand at 680.220 kb on + strand at 680.221 kb on + strand at 680.223 kb on - strand at 680.228 kb on - strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 677,758 - Shew_0598 0.84 -0.1 677,847 - -0.0 677,895 - +0.5 677,942 + +0.1 677,948 + +0.3 677,954 + -3.1 677,956 - +0.1 677,956 - +0.2 677,956 - -0.1 677,956 - +0.0 678,027 + +0.7 678,107 + +0.1 678,188 - +0.1 678,206 - +0.2 678,276 - +0.2 678,282 + +0.4 678,282 + +0.4 678,316 + +0.2 678,316 + -0.2 678,371 + +0.1 678,379 - -0.2 678,379 - +0.2 678,486 + +0.3 678,487 + +0.9 678,487 + -0.3 678,521 - -0.0 678,524 + -0.0 678,532 - +0.8 678,532 - +0.7 678,604 + +0.3 678,606 + -0.8 678,624 - Shew_0599 0.12 +0.1 678,642 - Shew_0599 0.14 -0.0 678,649 + Shew_0599 0.15 +0.4 678,662 + Shew_0599 0.17 -0.5 678,706 + Shew_0599 0.22 +0.1 678,728 + Shew_0599 0.25 -0.5 678,728 + Shew_0599 0.25 -0.8 678,736 - Shew_0599 0.26 +0.0 678,760 - Shew_0599 0.29 +0.5 678,884 + Shew_0599 0.45 +0.2 678,884 + Shew_0599 0.45 -0.3 678,884 + Shew_0599 0.45 +0.5 678,884 + Shew_0599 0.45 +0.5 678,884 + Shew_0599 0.45 -0.1 678,884 + Shew_0599 0.45 +0.3 678,884 + Shew_0599 0.45 +0.5 678,884 + Shew_0599 0.45 +0.3 678,884 + Shew_0599 0.45 +0.0 678,884 + Shew_0599 0.45 -0.0 678,884 + Shew_0599 0.45 -0.1 678,884 + Shew_0599 0.45 -0.3 678,892 - Shew_0599 0.46 +0.1 678,892 - Shew_0599 0.46 +0.0 678,892 - Shew_0599 0.46 -0.6 678,892 - Shew_0599 0.46 +0.3 678,892 - Shew_0599 0.46 -0.3 678,892 - Shew_0599 0.46 +0.9 678,892 - Shew_0599 0.46 +0.9 678,892 - Shew_0599 0.46 +0.0 678,892 - Shew_0599 0.46 -1.0 678,892 - Shew_0599 0.46 +0.2 678,892 - Shew_0599 0.46 +0.3 678,895 - Shew_0599 0.47 -0.1 678,897 + Shew_0599 0.47 +0.2 678,897 + Shew_0599 0.47 -0.1 678,897 + Shew_0599 0.47 -0.0 678,897 + Shew_0599 0.47 -0.2 678,903 - Shew_0599 0.48 +0.1 678,903 - Shew_0599 0.48 -0.2 678,905 - Shew_0599 0.48 +0.8 678,905 - Shew_0599 0.48 -0.1 678,906 + Shew_0599 0.48 +0.1 678,914 - Shew_0599 0.49 +1.0 678,915 - Shew_0599 0.49 +0.6 678,954 + Shew_0599 0.54 -0.1 678,968 - Shew_0599 0.56 +0.3 678,968 - Shew_0599 0.56 +0.6 678,975 - Shew_0599 0.57 +0.5 679,066 + Shew_0599 0.69 +0.6 679,072 - Shew_0599 0.69 +0.8 679,091 + Shew_0599 0.72 -0.0 679,091 + Shew_0599 0.72 +1.4 679,091 + Shew_0599 0.72 +0.2 679,091 + Shew_0599 0.72 -0.0 679,091 + Shew_0599 0.72 +0.6 679,091 + Shew_0599 0.72 -0.4 679,091 + Shew_0599 0.72 +0.6 679,091 + Shew_0599 0.72 -0.1 679,091 + Shew_0599 0.72 +1.6 679,091 + Shew_0599 0.72 +0.5 679,091 + Shew_0599 0.72 -0.3 679,099 - Shew_0599 0.73 +1.3 679,099 - Shew_0599 0.73 +0.9 679,099 - Shew_0599 0.73 +0.3 679,099 - Shew_0599 0.73 +0.3 679,099 - Shew_0599 0.73 +1.5 679,100 + Shew_0599 0.73 +1.6 679,112 + Shew_0599 0.75 +0.8 679,124 - Shew_0599 0.76 +0.3 679,135 - Shew_0599 0.78 -0.4 679,135 + Shew_0599 0.78 +0.4 679,183 + Shew_0599 0.84 -0.2 679,183 - Shew_0599 0.84 -0.3 679,191 + Shew_0599 0.85 -0.5 679,199 - Shew_0599 0.86 -0.1 679,199 - Shew_0599 0.86 +0.4 679,213 + Shew_0599 0.88 +0.2 679,213 + Shew_0599 0.88 +0.0 679,280 + -0.4 679,305 - -1.1 679,305 - -0.1 679,326 + +0.3 679,326 + +0.1 679,326 + +0.0 679,334 - +0.3 679,334 - +0.7 679,334 - -0.1 679,345 - +0.2 679,356 - -1.4 679,397 + -0.8 679,404 - +0.2 679,419 + Shew_0600 0.14 -0.6 679,445 - Shew_0600 0.23 -0.3 679,447 - Shew_0600 0.23 +0.4 679,543 - Shew_0600 0.54 +0.4 679,551 - Shew_0600 0.56 +0.6 679,553 + Shew_0600 0.57 -0.1 679,553 + Shew_0600 0.57 +0.7 679,556 - Shew_0600 0.58 -0.1 679,561 - Shew_0600 0.59 +0.5 679,561 - Shew_0600 0.59 +0.5 679,561 - Shew_0600 0.59 -0.1 679,561 - Shew_0600 0.59 -0.4 679,561 - Shew_0600 0.59 -0.1 679,580 + Shew_0600 0.65 +1.9 679,580 + Shew_0600 0.65 +0.1 679,587 + Shew_0600 0.68 -0.1 679,587 + Shew_0600 0.68 +0.4 679,588 - Shew_0600 0.68 +0.6 679,588 - Shew_0600 0.68 +0.4 679,588 - Shew_0600 0.68 +0.4 679,588 - Shew_0600 0.68 +1.0 679,588 - Shew_0600 0.68 +0.7 679,588 - Shew_0600 0.68 +1.3 679,593 - Shew_0600 0.70 +0.4 679,597 + Shew_0600 0.71 -1.1 679,611 + Shew_0600 0.75 +0.1 679,657 + -1.2 679,702 + -0.0 679,702 + +0.1 679,710 - +0.5 679,710 - -0.3 679,710 - +0.3 679,730 - +0.1 679,730 - +2.1 679,730 - +0.5 679,730 - -0.2 679,730 - +0.2 679,737 + +0.2 679,745 - +0.3 679,745 - +2.5 679,745 - +0.8 679,745 - +1.6 679,745 - +0.3 679,746 + +0.2 679,754 - +0.1 679,754 - +0.6 679,754 - +2.3 679,754 - +0.2 679,754 - +0.1 679,758 + -0.1 679,758 + +0.2 679,758 + -0.2 679,763 + +0.1 679,766 - +0.2 679,766 - +0.1 679,803 + -0.2 679,803 + +0.1 679,811 - -0.1 679,811 - +0.0 679,811 - +0.2 679,855 + +0.4 679,907 + -0.1 679,907 + -0.1 679,915 + -0.1 679,915 - +0.9 679,915 - +0.2 679,915 - +0.6 679,915 - +0.2 679,915 - +0.4 679,915 - +0.1 679,915 - -0.2 679,915 + +0.7 679,915 - -0.0 679,923 - +0.2 679,923 - -1.3 679,930 - -1.0 679,968 + +1.3 679,983 - +0.3 680,003 - +0.9 680,060 + -0.1 680,060 + -0.7 680,060 + +0.3 680,060 + +0.1 680,060 + +0.4 680,060 + +0.5 680,066 + +0.4 680,068 - -0.5 680,068 - +1.5 680,068 - +1.6 680,068 - -0.2 680,074 + +1.0 680,075 - +0.2 680,082 - -1.4 680,084 + +0.1 680,089 - +0.2 680,116 + +0.2 680,164 + +0.5 680,164 + -0.8 680,164 + -0.3 680,164 + +0.6 680,172 - -0.2 680,172 - -0.1 680,172 + -0.0 680,174 + -0.3 680,220 + -0.1 680,220 + -0.1 680,221 + +0.9 680,223 - +0.3 680,228 - -0.0 680,234 + +0.6 680,234 + -0.0 680,234 + -2.4 680,234 + +0.1 680,234 + +0.0 680,234 + -0.1 680,234 + +0.3 680,234 + +0.0 680,242 - -0.4 680,242 - -0.1 680,242 - -0.7 680,242 - +0.1 680,242 - +0.4 680,242 - -1.8 680,242 - +1.1 680,242 - -2.1 680,244 + +0.4
Or see this region's nucleotide sequence