Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0506 and Shew_0507 are separated by 127 nucleotides Shew_0507 and Shew_0508 are separated by 73 nucleotides
Shew_0506: Shew_0506 - LysR family transcriptional regulator (RefSeq), at 564,571 to 565,488
_0506
Shew_0507: Shew_0507 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 565,616 to 566,707
_0507
Shew_0508: Shew_0508 - xanthine/uracil/vitamin C permease (RefSeq), at 566,781 to 567,938
_0508
Position (kb) 565
566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 564.723 kb on + strand, within Shew_0506 at 564.728 kb on + strand, within Shew_0506 at 564.731 kb on - strand, within Shew_0506 at 564.731 kb on - strand, within Shew_0506 at 564.736 kb on - strand, within Shew_0506 at 564.977 kb on - strand, within Shew_0506 at 565.411 kb on - strand at 565.443 kb on + strand at 565.830 kb on + strand, within Shew_0507 at 565.909 kb on + strand, within Shew_0507 at 565.917 kb on - strand, within Shew_0507 at 566.090 kb on + strand, within Shew_0507 at 566.103 kb on - strand, within Shew_0507 at 566.344 kb on - strand, within Shew_0507 at 566.613 kb on - strand at 567.025 kb on + strand, within Shew_0508 at 567.025 kb on + strand, within Shew_0508 at 567.033 kb on - strand, within Shew_0508 at 567.033 kb on - strand, within Shew_0508 at 567.044 kb on + strand, within Shew_0508 at 567.065 kb on + strand, within Shew_0508 at 567.073 kb on - strand, within Shew_0508 at 567.073 kb on - strand, within Shew_0508 at 567.397 kb on + strand, within Shew_0508 at 567.595 kb on - strand, within Shew_0508 at 567.665 kb on - strand, within Shew_0508 at 567.680 kb on - strand, within Shew_0508
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 564,723 + Shew_0506 0.17 +0.8 564,728 + Shew_0506 0.17 -0.1 564,731 - Shew_0506 0.17 -0.3 564,731 - Shew_0506 0.17 -0.3 564,736 - Shew_0506 0.18 +0.8 564,977 - Shew_0506 0.44 +0.1 565,411 - +0.6 565,443 + -3.3 565,830 + Shew_0507 0.20 +1.2 565,909 + Shew_0507 0.27 +0.1 565,917 - Shew_0507 0.28 +0.5 566,090 + Shew_0507 0.43 -0.1 566,103 - Shew_0507 0.45 -0.1 566,344 - Shew_0507 0.67 +0.3 566,613 - +1.5 567,025 + Shew_0508 0.21 -1.2 567,025 + Shew_0508 0.21 +0.3 567,033 - Shew_0508 0.22 +0.2 567,033 - Shew_0508 0.22 +0.0 567,044 + Shew_0508 0.23 -0.4 567,065 + Shew_0508 0.25 -0.2 567,073 - Shew_0508 0.25 +0.5 567,073 - Shew_0508 0.25 +0.3 567,397 + Shew_0508 0.53 -0.5 567,595 - Shew_0508 0.70 +0.2 567,665 - Shew_0508 0.76 -0.6 567,680 - Shew_0508 0.78 +1.2
Or see this region's nucleotide sequence