Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0477 and Shew_0478 are separated by 619 nucleotides Shew_0478 and Shew_0479 are separated by 2 nucleotides Shew_0479 and Shew_0480 are separated by 69 nucleotides
Shew_0477: Shew_0477 - hypothetical protein (RefSeq), at 534,699 to 535,280
_0477
Shew_0478: Shew_0478 - XRE family transcriptional regulator (RefSeq), at 535,900 to 536,136
_0478
Shew_0479: Shew_0479 - HipA domain-containing protein (RefSeq), at 536,139 to 537,440
_0479
Shew_0480: Shew_0480 - Sel1 domain-containing protein (RefSeq), at 537,510 to 538,568
_0480
Position (kb) 536
537
538 Strain fitness (log2 ratio) -1
0
1
2 at 535.241 kb on + strand at 535.301 kb on + strand at 535.524 kb on + strand at 535.639 kb on - strand at 535.704 kb on + strand at 535.878 kb on - strand at 536.049 kb on - strand, within Shew_0478 at 536.130 kb on + strand at 536.186 kb on + strand at 536.409 kb on - strand, within Shew_0479 at 536.419 kb on - strand, within Shew_0479 at 536.672 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.943 kb on + strand, within Shew_0479 at 537.104 kb on + strand, within Shew_0479 at 537.434 kb on + strand at 537.443 kb on - strand at 537.961 kb on - strand, within Shew_0480 at 538.003 kb on + strand, within Shew_0480
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 535,241 + +0.1 535,301 + +0.1 535,524 + +0.6 535,639 - -0.1 535,704 + +0.0 535,878 - -1.4 536,049 - Shew_0478 0.63 +1.4 536,130 + +0.1 536,186 + +0.2 536,409 - Shew_0479 0.21 +0.4 536,419 - Shew_0479 0.22 +1.0 536,672 - Shew_0479 0.41 +0.3 536,785 - Shew_0479 0.50 +1.2 536,785 - Shew_0479 0.50 +0.4 536,785 - Shew_0479 0.50 +0.1 536,785 - Shew_0479 0.50 -0.6 536,943 + Shew_0479 0.62 +2.0 537,104 + Shew_0479 0.74 +1.0 537,434 + +0.1 537,443 - +0.2 537,961 - Shew_0480 0.43 +0.3 538,003 + Shew_0480 0.47 -0.1
Or see this region's nucleotide sequence